PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.RY734 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LSD | ||||||||
Protein Properties | Length: 130aa MW: 13880.1 Da PI: 7.6097 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.3 | 2.6e-13 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Araip.RY734 29 CSGCRNLLLYPVGASSVCCAVCNAV 53 ************************9 PP | |||||||
2 | zf-LSD1 | 47 | 4e-15 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Araip.RY734 68 CGGCHTLLMYIRGATSVQCSCCHTV 92 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.1E-13 | 26 | 56 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-10 | 29 | 53 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.6E-15 | 65 | 94 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 68 | 92 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MPVPLAPYPT PPAPHTPPSA NGQQSQLVCS GCRNLLLYPV GASSVCCAVC NAVTAVPPPG 60 TEMAQLICGG CHTLLMYIRG ATSVQCSCCH TVNLAMEGIN KHHRAEVQQL NQTIYRAKLN 120 DTETLLSWFC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.RY734 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016174851.1 | 1e-91 | protein LOL1 isoform X3 | ||||
Refseq | XP_020994965.1 | 1e-91 | protein LOL1 isoform X3 | ||||
Refseq | XP_025627318.1 | 1e-91 | protein LOL1 isoform X3 | ||||
Refseq | XP_025699461.1 | 1e-91 | protein LOL1 isoform X3 | ||||
Swissprot | Q93ZB1 | 1e-46 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A445ARN2 | 2e-68 | A0A445ARN2_ARAHY; Uncharacterized protein | ||||
STRING | Aquca_044_00148.1 | 2e-56 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF30098 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-30 | lsd one like 1 |
Publications ? help Back to Top | |||
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