PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RVY7E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 249aa    MW: 27430.5 Da    PI: 6.632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RVY7EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-05172194123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Araip.RVY7E 172 FMCRKCGKAFAVRGDWRTHEKNC 194
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.46E-584110No hitNo description
Gene3DG3DSA:3.30.160.604.6E-688107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.5888110IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6488115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576678.97E-7153192No hitNo description
Gene3DG3DSA:3.30.160.606.0E-6168192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549172192IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFDEEDDAD PDDADADADA ADATTVTVAL HIGLPSPSAA EMASVLSEKE HGGGGEDSGG  60
GGSTGNKVNK GQYWIPTPSQ ILIGPTQFSC PVCCKTFNRY NNMQMHMWGH GSQYRKGPES  120
LRGTQPTGML RLPCYCCAPG CRNNIDHPRS KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA  180
FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG SGHAAYGIDG FEEDDDPASE  240
VEQDHESTQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RVY7E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988931e-170BT098893.1 Soybean clone JCVI-FLGm-23O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207458.10.0zinc finger protein WIP2
RefseqXP_025663020.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-140ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A444YHE60.0A0A444YHE6_ARAHY; Uncharacterized protein
STRINGXP_007162251.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]