PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RTT76

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 169aa MW: 19115.7 Da PI: 7.5

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RTT76	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.2	9.5e-17	61	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++YAk +GFs+r++ ++ + +ei+++ +Cs+e k +++ + +++t+++ +C a++ + k g w ++k++l+H+H+l Araip.RTT76 61 KFYRNYAKAAGFSTRVRCTNMK--GNEIKNQLITCSRERKWKSKISP---TEKTNPTAGLNCPARIYILIYKdVGAWIISKVVLDHSHPLL 146 6*************987776..7889********9998777...8999**********988879*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-14	61	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAG 60 KFYRNYAKAA GFSTRVRCTN MKGNEIKNQL ITCSRERKWK SKISPTEKTN PTAGLNCPAR 120 IYILIYKDVG AWIISKVVLD HSHPLLSKES RDAQTAQGTK HVHSSYDRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RTT76

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-164	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997160.1	6e-84	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997362.1	7e-84	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445E7Y5	3e-95	A0A445E7Y5_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-10	FAR1 family protein