PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RP1HV
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 349aa    MW: 37083.5 Da    PI: 7.0367
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RP1HVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.96.2e-691312753154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                  +g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqqla+ ++++    a++ +kr+r++    +s++   + + + s + +
  Araip.RP1HV 131 AGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASIQQQQ--LLAADVPKRQRDH----ASSTRLPT-NPSPSASAS 221
                  6899***************************************************987666..4588999999986....33333333.333345567 PP

       DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   ++++P+ vss+a frcvrvs++dd e+e+aYqtav+igGhvfkGiLydqG+++
  Araip.RP1HV 222 GMENFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHVFKGILYDQGPDH 275
                  8999************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.4E-67133274IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-27135177IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.6E-27226273IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAGLFSLGGG SSSSSGRGGR GNTNQQQQHD QHQQHAEIPP SDTFYWYKNE DVSSYRGGLE  60
LWNHHHHHHQ PEHDLIPQAR PLFHQDLYSS AAALGVGPTT VSDDQSPSRS AFLVTASAVG  120
SGAASGAGSG AGGISCQDCG NQAKKDCPHM RCRTCCKSRG FDCQTHVKST WVPASKRRER  180
QQQLASIQQQ QLLAADVPKR QRDHASSTRL PTNPSPSASA SGMENFPAVV SSPAEFRCVR  240
VSGIDDTEDE YAYQTAVNIG GHVFKGILYD QGPDHATTTT TNSSSYVAGD TSSTGAAAHH  300
PNLNLIAPNT NTTTSALVSA AHTTQQLVDP SSMYPPPPLS TFMAGSSAF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RP1HV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201906.10.0protein SHORT INTERNODES-like
TrEMBLA0A444Z9F10.0A0A444Z9F1_ARAHY; Uncharacterized protein
STRINGXP_007158606.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.18e-71Lateral root primordium (LRP) protein-related