PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RLH2R

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 870aa MW: 96849.3 Da PI: 6.8502

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RLH2R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.4	2.4e-27	594	645	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l+++Fs+++kdAA+++gvc+T+LKriCR+ GI+RWP+Rkik++ Araip.RLH2R 594 AEKKVSLSVLQQHFSGTLKDAARSIGVCPTTLKRICRKQGISRWPSRKIKKV 645 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.677	574	665	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-24	598	645	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.0E-19	770	849	No hit	No description
SMART	SM00666	1.2E-21	770	852	IPR000270	PB1 domain
PROSITE profile	PS51745	19.535	770	852	IPR000270	PB1 domain
SuperFamily	SSF54277	2.78E-19	771	854	No hit	No description
Pfam	PF00564	1.1E-16	773	851	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MEPYPYSPKR SGASYWGSCR VQLEGSTSLD GDMSNSISDD MACSFSGLMN IDPYAGLYNS 60 PSITDQVFSN GLPSSYPSTP GFNLEENNSS QFFMTEMNGY FNTKQGSPGY GEKIAFQQMD 120 PLLGFFDGTD DTHSLSSMQK INGSSQHLDA IGSYIMSKPA SLSLDERMLK ALSVFKESAG 180 GGILAQVWVP IKDGDQFFLT TSEQPYLLDQ ILAGYREVSR TYTFSTEGKP GSLPGLPGRV 240 FMSKTPEWTS NIGYYNKNEY LRMDDAINHE VRGSIGLPIS DLHSELPCCA VLELVTTNEK 300 PDFEKEMDIV CHALQNVDLM ANMPPRLLPQ CLSNSKRAAL TAIVDVLRSV CHAHRLPMAL 360 TWIPCCVAED AEGKDTKIHI KEGHSSPREK NILCVEESAC YVTDKAMEGF VHACIEHHLQ 420 EGKGIAGRAH QSNHPFFCPD VKAYNISEYP LVHHARKYNL NAAVAIRLRS TYTNDDDYIL 480 EFFLPVNMKG SSEQQLLLDN LSGTMQKVCR NLRTVSDEEL SRMKSSQVGF KNKNVPRIFP 540 MSRRNSQIPL TNSNHDSVRK MSIKASNQGN NGIESSHNQE RNRSRRMVET KRPAEKKVSL 600 SVLQQHFSGT LKDAARSIGV CPTTLKRICR KQGISRWPSR KIKKVNRSLK KIQTVLDTVE 660 GLEGGLKFDP CIGALVSREG ESIIQEIDAH DTLLHPENVT AKEKWILNKG GSREDKSKHS 720 SILVNRDDDG AVEHNHPSSS GFTNSSNDSG SNQRQNLKGK STFADKTGLK LQAKATYGED 780 TVRFKFDPSW GCLKLYEEVA TRFKLQNGSF QLKYLDDEQE LVRLLDDSDL QECIEILDEA 840 GKSCVRFVVR DIPCNLSSSS CSSCYLGCDS

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MEPYPYSPKR SGASYWGSCR VQLEGSTSLD GDMSNSISDD MACSFSGLMN IDPYAGLYNS  60
PSITDQVFSN GLPSSYPSTP GFNLEENNSS QFFMTEMNGY FNTKQGSPGY GEKIAFQQMD  120
PLLGFFDGTD DTHSLSSMQK INGSSQHLDA IGSYIMSKPA SLSLDERMLK ALSVFKESAG  180
GGILAQVWVP IKDGDQFFLT TSEQPYLLDQ ILAGYREVSR TYTFSTEGKP GSLPGLPGRV  240
FMSKTPEWTS NIGYYNKNEY LRMDDAINHE VRGSIGLPIS DLHSELPCCA VLELVTTNEK  300
PDFEKEMDIV CHALQNVDLM ANMPPRLLPQ CLSNSKRAAL TAIVDVLRSV CHAHRLPMAL  360
TWIPCCVAED AEGKDTKIHI KEGHSSPREK NILCVEESAC YVTDKAMEGF VHACIEHHLQ  420
EGKGIAGRAH QSNHPFFCPD VKAYNISEYP LVHHARKYNL NAAVAIRLRS TYTNDDDYIL  480
EFFLPVNMKG SSEQQLLLDN LSGTMQKVCR NLRTVSDEEL SRMKSSQVGF KNKNVPRIFP  540
MSRRNSQIPL TNSNHDSVRK MSIKASNQGN NGIESSHNQE RNRSRRMVET KRPAEKKVSL  600
SVLQQHFSGT LKDAARSIGV CPTTLKRICR KQGISRWPSR KIKKVNRSLK KIQTVLDTVE  660
GLEGGLKFDP CIGALVSREG ESIIQEIDAH DTLLHPENVT AKEKWILNKG GSREDKSKHS  720
SILVNRDDDG AVEHNHPSSS GFTNSSNDSG SNQRQNLKGK STFADKTGLK LQAKATYGED  780
TVRFKFDPSW GCLKLYEEVA TRFKLQNGSF QLKYLDDEQE LVRLLDDSDL QECIEILDEA  840
GKSCVRFVVR DIPCNLSSSS CSSCYLGCDS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RLH2R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016170873.1	0.0	protein NLP2
Refseq	XP_016170874.1	0.0	protein NLP2
Refseq	XP_016170875.1	0.0	protein NLP2
Refseq	XP_016170877.1	0.0	protein NLP2
Refseq	XP_016170878.1	0.0	protein NLP2
Refseq	XP_020964181.1	0.0	protein NLP2
Refseq	XP_020964182.1	0.0	protein NLP2
Refseq	XP_020964183.1	0.0	protein NLP2
Refseq	XP_020964184.1	0.0	protein NLP2
Refseq	XP_025671043.1	0.0	protein NLP2
Refseq	XP_025671044.1	0.0	protein NLP2
Refseq	XP_025671045.1	0.0	protein NLP2
Refseq	XP_025671046.1	0.0	protein NLP2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A444Y8M0	0.0	A0A444Y8M0_ARAHY; Uncharacterized protein
STRING	XP_004486872.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]