PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RB7C2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 426aa    MW: 46391.4 Da    PI: 7.2612
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RB7C2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11104160155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Araip.RB7C2 104 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 160
                  57*******************4444.2455535555.779999**************98 PP
2AP247.64.1e-15196247155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Araip.RB7C2 196 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 247
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-15104170IPR016177DNA-binding domain
PfamPF008476.0E-9104160IPR001471AP2/ERF domain
CDDcd000181.09E-19104170No hitNo description
SMARTSM003809.2E-23105174IPR001471AP2/ERF domain
PROSITE profilePS5103217.319105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-12105169IPR001471AP2/ERF domain
PRINTSPR003672.4E-6106117IPR001471AP2/ERF domain
CDDcd000182.89E-25196255No hitNo description
PfamPF008475.1E-10196247IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-18196256IPR016177DNA-binding domain
SMARTSM003802.8E-33197261IPR001471AP2/ERF domain
PROSITE profilePS5103219.045197255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18197255IPR001471AP2/ERF domain
PRINTSPR003672.4E-6237257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MIASSNNTTA PTTQTLSLSM STGSQSLPLL PPTNNNNVSV AGAGAGGGGG DSYSSSEINS  60
SNNNKQIVVV AGGSSSTGAV ENGSIVENNN VTKKSIDTFG QRTSIYRGVT RHRWTGRYEA  120
HLWDNSCRRE GQTRKGRQGG YDKEEKAARA YDLAALKYWG TTTTTNFPIS QYEKELEEMK  180
HMTRQEKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI  240
AAIKFRGLNA VTNFDMNRYD VKSILESSTL PIGGAAKRLK DMDNGDLINV DNSVHQRQHQ  300
EDHSNNINSH SLTDGINNFV TAAAATHHGD SSDQNNVSHN FHQEIHPLQL GGSTHNFFQH  360
GIMTLDHSAS MDNNNSSGSS SVGLGYESVF GSEAYNQTHG RHLYYQQQSS AMDHNNNGAV  420
VVKDAI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RB7C2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8999092e-85AY899909.1 Medicago truncatula AP2/EREBP transcription factor BABY BOOM (BBM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025696403.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A444ZR040.0A0A444ZR04_ARAHY; Uncharacterized protein
STRINGXP_007139701.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-121AP2 family protein