PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.R6HI8

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 309aa MW: 35200.5 Da PI: 7.8542

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.R6HI8	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	144	163	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+F+r n++ H+ Araip.R6HI8 144 FACPLCFKTFNRYNNMQMHM 163 78*****************9 PP
2	zf-C2H2	13.6	0.00019	228	250	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F + + ++H +++ Araip.R6HI8 228 FTCRKCSKAFAVRGDWRTHEKNC 250 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-5	144	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.83	144	166	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.619	144	171	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2
SMART	SM00355	310	190	223	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.92E-6	210	248	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-5	215	248	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	55	228	248	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVMADSTYSN SNNDYNTNNL LLLDLNYSPS PSPSSSPSTN SFNYFHPPPI TQPLPFLHLS 60 PTTTHQQQQL DLQSSFCAME VDNNNNNKVP LHLGLQSTLV VQEEEEEEEE KITVASEYVM 120 SNGINRGQYW IPTPTQILIG PTQFACPLCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT 180 QPTAMLKLPC YCCAPGCKNN IDHPRAKPLK DFRTLQTHYK RKHGLKPFTC RKCSKAFAVR 240 GDWRTHEKNC GKRWYCSCGS DFKHKRSLKD HIKAFGNGHK SYAINDHLCV DQDDNGATSE 300 VEENDSFHS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.R6HI8

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016191494.1	0.0	zinc finger protein WIP2-like isoform X1
Refseq	XP_029147145.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-116	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A445A9B8	0.0	A0A445A9B8_ARAHY; Uncharacterized protein
STRING	XP_007132003.1	1e-132	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]