PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.R1091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 471aa MW: 53851.8 Da PI: 7.8776 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.6 | 4.8e-14 | 51 | 137 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk + Fs+r+ +++ +ei+++ +Cs+e k +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.R1091 51 KFYRNYAKATDFSTRVWCINRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6***************998877..8889***********99998776...8999**************998879***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-11 | 51 | 137 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.186 | 300 | 336 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-4 | 302 | 333 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.0E-4 | 311 | 338 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MDHSTSDCQL NLGEVDYEFE SNEVSEPLSV VDDELVSKVG MTFTTLEDAG KFYRNYAKAT 60 DFSTRVWCIN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHY 180 FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC 240 ATKSSIEAQF QDAYTHQKFR EVQAQFREKA NCITRLTNSA LGYSVYEVGE QVSSLIFNKF 300 VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKELTAILHR 360 PYDNVMAEME SLKAKRKGTS SLSHEDANLE SVNELQSPPR IRTRGRPKNR LGSKLDKQIA 420 NATKKKKTKV LSEINLFDAA SAVHSNSSQY QGHVMNYQFR VPAAGDNSLD V |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.R1091 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445A1M9 | 0.0 | A0A445A1M9_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 5e-31 | FAR1 family protein |