PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.QZ4E9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 357aa MW: 40628 Da PI: 8.5351

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.QZ4E9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.7	1.6e-12	51	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++YAk + Fs+r+++++++ +ei+++ s+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+ +++ Araip.QZ4E9 51 KFYRNYAKAADFSTRVRSTNRK--GNEIKNQLIISSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSDPCC 136 6**************98887..88899********998877...8999**********998879**********98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-9	51	137	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	3.5E-5	214	247	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.025	214	250	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	225	252	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVSEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA 60 DFSTRVRSTN RKGNEIKNQL IISSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSDPCCPNKA EMLKQHRELS MSIRRTIENN EEAVSKCVYS SKFRKVQAQF 180 RGKANCITRL TNSALGYSVY DVGEQVSSSI FNKFVVTYDS VAVKVKCQCL LFESRGILCR 240 HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHIKSSHDE PLLEPRSKRF DQLVFRSQNI 300 CEFASESEEL TAILHRTYDN IMAEMESSKA KRKGTSSLSH EDANLESVNE LQSPPRI

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDYEFE SNEVSEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA  60
DFSTRVRSTN RKGNEIKNQL IISSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSDPCCPNKA EMLKQHRELS MSIRRTIENN EEAVSKCVYS SKFRKVQAQF  180
RGKANCITRL TNSALGYSVY DVGEQVSSSI FNKFVVTYDS VAVKVKCQCL LFESRGILCR  240
HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHIKSSHDE PLLEPRSKRF DQLVFRSQNI  300
CEFASESEEL TAILHRTYDN IMAEMESSKA KRKGTSSLSH EDANLESVNE LQSPPRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.QZ4E9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-124	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445E9M1	0.0	A0A445E9M1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-16	far-red elongated hypocotyls 3