PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.QX18T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 482aa    MW: 54385.1 Da    PI: 6.7726
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.QX18TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.86.8e-24114221186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                  +Wt+ +v++Li a+ +++++ +++                      +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++
  Araip.QX18T 114 KWTDAMVRLLIMAVYYIGDEAGSEGvggggggggdpsgkkkntgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVV 211
                  7**************9999998765566778888899999999999**********************************************55**** PP

     trihelix  77 stcpyfdqle 86 
                  ++ ++++ ++
  Araip.QX18T 212 ENQSFLETMD 221
                  ******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-21112246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEANGIGSVI YTSINTSLLG IENNTLQQNP HNNLHHHHPP PQMVYSTHHD TESHPSQQQQ  60
QQQPQQAMKH GYPYSSKKPQ SSTFSDEDEP GGGFGADESS GDPKRKASPW HRMKWTDAMV  120
RLLIMAVYYI GDEAGSEGVG GGGGGGGDPS GKKKNTGLLQ KKGKWKSVSR AMMEKGFYVS  180
PQQCEDKFND LNKRYKRVND ILGKGTACRV VENQSFLETM DLSPKMKEEV RKLLNSKHLF  240
FREMCAYHNS CGHGGGAAAV TAAGGNGQHS AEAGTEQPLH IQQPQPPQHQ QGQQRCFHSS  300
VNGVGMLKED DDDEEDDESD DFSDEDEEES GEGGGSRGQV EDDENDVVRS RKRHRNKGGF  360
CVTSSSTSAS QLMQQLNNEV AGVLQDGGKN PWEKKQWMKK RVLQLEEQQV RYHVEAFELE  420
KQRLKWVRFS SKKERDMERD KLENERRRLE NERLLLLLRQ KELEFTALHH LKHQQQQQHS  480
ST
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.QX18T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016208080.10.0uncharacterized protein LOC107648773
RefseqXP_025657712.10.0uncharacterized protein LOC112754312
TrEMBLA0A444YP380.0A0A444YP38_ARAHY; Uncharacterized protein
STRINGXP_007162836.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-69sequence-specific DNA binding transcription factors