PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.QQ6TU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 727aa    MW: 81230.5 Da    PI: 6.5808
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.QQ6TUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22171262198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f kvlt sd++++g +++ +k+a+e+  + +   +l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+v+r
  Araip.QQ6TU 171 FSKVLTASDTSTHGGFSVLRKHATECL-P-AL--ELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGQNGELRVGVRR 262
                  88************************4.3.33..6************************************************..3489999****98 PP
2Auxin_resp97.52e-32288369183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe++ds    +r+sGt+vg++d++p +W+nSkWrsLk
  Araip.QQ6TU 288 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLDAVNNKFSVGMRFKMRFEGDDSTDtdKRFSGTIVGLEDISP-HWENSKWRSLK 369
                  789***************6..9*******************************97522688**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-34160291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-35165277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-20169262No hitNo description
SMARTSM010192.2E-22171264IPR003340B3 DNA binding domain
PfamPF023621.6E-20171262IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702171264IPR003340B3 DNA binding domain
PfamPF065072.2E-30288369IPR010525Auxin response factor
PfamPF023091.8E-6476652IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-11616692No hitNo description
PROSITE profilePS5174523.482616697IPR000270PB1 domain
PfamPF023092.6E-6657700IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MMLNRGSNVS AEGGGDELYS QLWKACAGPL VDVPRVGERV FYFPQGHMEQ LEASTNQELN  60
QRIPLFKLPS KILCRVVNIH LLAEQETDEV YAQITLVPES NLEASTNQEL NQRIPLFKLP  120
SKILCRVVNI HLLAEQETDE VYAQITLVPE SNPTIPDPSP IEPTRPTVHS FSKVLTASDT  180
STHGGFSVLR KHATECLPAL ELVAKDLHGY EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL  240
VAGDTFVFLR GQNGELRVGV RRLARQQSNM PSSVISSQSM HLGVLATASH AVATQTLFVV  300
YYKPRTSQFI ISLNKYLDAV NNKFSVGMRF KMRFEGDDST DTDKRFSGTI VGLEDISPHW  360
ENSKWRSLKV QWDEPAAVPR PDRVSPWEME PYVAPALTSS VQPAVVKAKR PRPPSEHPDL  420
DTQSAASVFW DSGLTQADMT QHSVMAESKR SDTTSVWHHK QIDMNSKSNS NLMSRNQTEG  480
SWLSSPHSSC PSQLFQDTMD DSKSVSAWPA PNPHSSRLNN DHVHDQVDKE NKAETATSCR  540
LFGIDLIDHS RNSSAVEKAA AQAVNVHSFT SEGCVSTVSK TEAGQKSDAS KTGKEKKQEQ  600
QQVSPKESQS KQICSRSRTK VQMQGVAVGR AVDLTMLDGY EHLIVELEEL FDIKGQLQDR  660
NKWEIVFTDD EGDMMLVGDD PWPEFCHMVR RIFICSSQDV KKMSTGSKLP ISSIEEGTVI  720
SSETAET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-152103918354Auxin response factor 1
4ldw_A1e-152103918354Auxin response factor 1
4ldw_B1e-152103918354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408412KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.QQ6TU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183752.10.0auxin response factor 9 isoform X1
RefseqXP_020971750.10.0auxin response factor 9 isoform X3
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445AJ590.0A0A445AJ59_ARAHY; Auxin-induced protein
STRINGGLYMA03G17450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9