PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.QHS2D

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 294aa MW: 32563 Da PI: 6.2307

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.QHS2D	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Araip.QHS2D 107 FSCNYCQRKFFSSQALGGHQNAH 129 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	104	134	No hit	No description
PROSITE profile	PS50157	11.344	107	134	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MKRNIDLEVE ASAEHESEVS SQVASSVSIQ EASAGPYSDS LDNSFIRNPI AVHPNWDAAS 60 LDLTLNFKNN ELGATRDSLG FSFSTTTSES SNDPASQTTE STAPRSFSCN YCQRKFFSSQ 120 ALGGHQNAHK RERTLAKRAM RMGFFSERYA SLASLPLHGS FRSFGIKAHS STMHHGFSPT 180 IMRPAPELKS NARFEQGYVG LPMFSEDDDS ELMWPCSFRQ VTDAGKNNHR EFIQTGNPNL 240 SFSEETEATH SIVLHDKELY KAALLENLKY LNLSSCPNLK HTPDLSGTPN LETP

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.QHS2D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016166773.1	0.0	zinc finger protein 4
Refseq	XP_016166774.1	0.0	zinc finger protein 4
Refseq	XP_016166775.1	0.0	zinc finger protein 4
Refseq	XP_016166776.1	0.0	zinc finger protein 4
Refseq	XP_020963042.1	0.0	zinc finger protein 4
Swissprot	Q39263	5e-42	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A444YCA6	0.0	A0A444YCA6_ARAHY; Uncharacterized protein
STRING	GLYMA14G39280.4	1e-115	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	8e-44	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]