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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.QG75W | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 268aa MW: 31418.2 Da PI: 8.3931 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 36.4 | 1.7e-11 | 59 | 131 | 9 | 80 |
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80
+ GF vrk++ +++ +n+ +t+++fvC +eg+r++ ++ ++ +r ++etr+gC ak+ v++ +++ ++++
Araip.QG75W 59 TNGFVVRKNRIRRNVKNE-VTQQQFVCFREGFRDPGFENdsHQCKRALKPETRCGCLAKICVHLGYKHLRYIHR 131
57**********996665.***************9877754667788999*************99987777776 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.7E-9 | 59 | 128 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 268 aa Download sequence Send to blast |
MLAEGCCVPK NYAEEVECVN CNVNEFFGDT FYDNWDERAV DSIDEFRYIN LKEITASETN 60 GFVVRKNRIR RNVKNEVTQQ QFVCFREGFR DPGFENDSHQ CKRALKPETR CGCLAKICVH 120 LGYKHLRYIH RLCTLRVDSK MYPFEERYFL RCICQMRSRE AQSELASVVR DLVLKSLLHA 180 LERFTANTLT REIFMLFKPM LSRACMLKVR SCTLTPSYEI STMSMSKNPN KEWNVSHYRD 240 RSIFKCSCFR MELLGIPCDR IVSSSSTS |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.QG75W |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015939157.1 | 3e-55 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A444YBH5 | 9e-78 | A0A444YBH5_ARAHY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3613 | 6 | 39 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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