PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.QDS9P | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18252.7 Da PI: 9.9131 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 94 | 115 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+r+++ rH+ H Araip.QDS9P 94 QCTSCGLRFKRQDEHSRHMDWH 115 7******************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 94 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MQGQSLHLHG GTLPPLHPSL PTAPSQMMSH PHADASVTSQ PPPAYLNLIS SLVNHGVISV 60 TNPPTNPPTV LDFIGMEFDP DILKVALYGD LPKQCTSCGL RFKRQDEHSR HMDWHVTRNR 120 MSKSRKQKGS QKWFASGSMW LSGVEASGKE SIPGFVGSRG YRGNER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes flowering by suppressing FLC-mediated inhibition of flowering through the regulation of FCA pre-mRNA alternative processing (PubMed:18298670). Regulates mRNA maturation including alternative polyadenylation, splicing or transcription initiation of stress-associated genes (PubMed:21364912). {ECO:0000269|PubMed:18298670, ECO:0000269|PubMed:21364912}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.QDS9P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029148746.1 | 7e-97 | polyadenylation and cleavage factor homolog 4-like | ||||
Swissprot | Q0WPF2 | 2e-40 | PCFS4_ARATH; Polyadenylation and cleavage factor homolog 4 | ||||
TrEMBL | A0A444Z7E7 | 6e-95 | A0A444Z7E7_ARAHY; Uncharacterized protein | ||||
STRING | XP_004489376.1 | 1e-55 | (Cicer arietinum) |
Publications ? help Back to Top | |||
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