PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Q8T53

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 426aa MW: 48101.9 Da PI: 8.7447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Q8T53	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	371	390	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ + +H++++ Araip.Q8T53 371 CSLCGKPF-KPEKMYKHMKSC 390 ******.*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	5.0E-38	11	256	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MEAKGEVRRL HIIYFLSNIG GRADHPHLIR VLHLARNGVY LRDVKRWLGE LRGKDLPEAF 60 SWSYKRRYKS GYVWQDLLDD DLITPISDNE YVLKGSQIHP TPFENFSPDG KIKNGHVLAE 120 IKSPQVHVTE GKQQPSLIEE ESRIIGRDTE SKMNTPLKVS EISQDSLVFS SERSSVTTDG 180 YESCKAEEEK EKPLVRSNKE CSIEKEHEKP ENCVLPSLYH KLLSKSIGNK EEQNKTDTPD 240 SSFSTSSSSS SQSSFSKLRN SSNRVSMAFR NWISCGTVDT NDAALIRMED AKKIDSNESM 300 TNLPENKAQI CKGDKFGGSA RCFRTSWNND QQENQHGARK SFDGEETNRS RRKLGDFLNQ 360 THHKPLGEPI CSLCGKPFKP EKMYKHMKSC KGIKALGTST ATAALADKTQ LHRSSTSNHT 420 NYLLTN

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MEAKGEVRRL HIIYFLSNIG GRADHPHLIR VLHLARNGVY LRDVKRWLGE LRGKDLPEAF  60
SWSYKRRYKS GYVWQDLLDD DLITPISDNE YVLKGSQIHP TPFENFSPDG KIKNGHVLAE  120
IKSPQVHVTE GKQQPSLIEE ESRIIGRDTE SKMNTPLKVS EISQDSLVFS SERSSVTTDG  180
YESCKAEEEK EKPLVRSNKE CSIEKEHEKP ENCVLPSLYH KLLSKSIGNK EEQNKTDTPD  240
SSFSTSSSSS SQSSFSKLRN SSNRVSMAFR NWISCGTVDT NDAALIRMED AKKIDSNESM  300
TNLPENKAQI CKGDKFGGSA RCFRTSWNND QQENQHGARK SFDGEETNRS RRKLGDFLNQ  360
THHKPLGEPI CSLCGKPFKP EKMYKHMKSC KGIKALGTST ATAALADKTQ LHRSSTSNHT  420
NYLLTN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Q8T53

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155880	5e-33	AC155880.3 Medicago truncatula chromosome 2 clone mte1-55i22, complete sequence.
GenBank	AC166745	5e-33	AC166745.4 Medicago truncatula clone mth2-193e13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016168730.1	0.0	uncharacterized protein LOC107611298
TrEMBL	A0A444Y1B5	0.0	A0A444Y1B5_ARAHY; Uncharacterized protein
STRING	GLYMA08G16910.2	1e-175	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20