PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Q6LLS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 645aa MW: 72888.5 Da PI: 4.9199

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Q6LLS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.7	2.4e-107	273	642	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh.lt 97 l++lL++cA+avss++ +a++lL +++ ++sp+gd++qRl +yf++AL+ar++++++++ +al++++ s s+ ++a++++ ++P+ kf+ + Araip.Q6LLS 273 LRSLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHYFVNALEARMSGTGTHIHSALSTKRPS---ASDMVKAYQMYASACPFDKFGIrFS 367 689***********************************************************999999...8999************97256 PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 N+ a+eg +++Hi+ f+i +G++Wp L+ L+ p+gpp+lRiTg++ p +le+tg+ La+++e+++vpfefn++vak++e +++e+L+ Araip.Q6LLS 368 INSIDNSAMEGVQTLHIVEFGIRYGFKWPGLIYRLSRLPSGPPKLRITGIEYPL--PGLKLEQTGQCLARYCERFNVPFEFNAVVAKKWERIKVEDLK 463 66666789****************************************66..99************************************ PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++E +aVn++++ ++l+de+v le++rd+vL+l+++ +P+v+v+ + +++++ F++rf ea+ +ysa+fd+l+++++r++ r ++E++++g+e Araip.Q6LLS 464 IRENEFVAVNCMFRFENLHDETVVLENPRDSVLELIRKANPNVFVHGIINGNYDAAFFVTRFKEAMFHYSAMFDMLDNTVARDDPIRLMYEEAIFGKE 561 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++nvvaceg+er+er +++kW+ r ++aGF++++l+e++ ++ k +lr+ + + ++++ + ++l++gWk+r L++ S+W Araip.Q6LLS 562 VMNVVACEGNERIERPHNYKKWQVRNTRAGFRQLSLDEQMIEKFKDMLRNEGyHKDFMLHADGKWLLQGWKGRILYASSCW 642 *********************************************9999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.574	247	622	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.2E-105	273	642	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MADPSHGGNP ATDFTTNRDE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL 60 LTAEKSLYDA IGQRYPSSAS TLSSSTSSSI QHHNYYPNVE SPGDSYSSIS SGSTCGTTNT 120 SSSADYFWSG FDLSMIPLMP NTLPFPDTFN FQSNPSSTTP QSNHRSDFTA TNNSSGLGQV 180 VIKTEEVDYD FEEEEEEEEE VQFLAESMGS SSKQSALYMD DTELSEFFDK VLLGAGLGRG 240 SSQADEGVPK DSRGKKSRAR KRNDKNDDEV IDLRSLLMQC AQAVSSDNRP MAKELLMQIK 300 LHSSPTGDAT QRLSHYFVNA LEARMSGTGT HIHSALSTKR PSASDMVKAY QMYASACPFD 360 KFGIRFSINS IDNSAMEGVQ TLHIVEFGIR YGFKWPGLIY RLSRLPSGPP KLRITGIEYP 420 LPGLKLEQTG QCLARYCERF NVPFEFNAVV AKKWERIKVE DLKIRENEFV AVNCMFRFEN 480 LHDETVVLEN PRDSVLELIR KANPNVFVHG IINGNYDAAF FVTRFKEAMF HYSAMFDMLD 540 NTVARDDPIR LMYEEAIFGK EVMNVVACEG NERIERPHNY KKWQVRNTRA GFRQLSLDEQ 600 MIEKFKDMLR NEGYHKDFML HADGKWLLQG WKGRILYASS CWVPA

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MADPSHGGNP ATDFTTNRDE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL  60
LTAEKSLYDA IGQRYPSSAS TLSSSTSSSI QHHNYYPNVE SPGDSYSSIS SGSTCGTTNT  120
SSSADYFWSG FDLSMIPLMP NTLPFPDTFN FQSNPSSTTP QSNHRSDFTA TNNSSGLGQV  180
VIKTEEVDYD FEEEEEEEEE VQFLAESMGS SSKQSALYMD DTELSEFFDK VLLGAGLGRG  240
SSQADEGVPK DSRGKKSRAR KRNDKNDDEV IDLRSLLMQC AQAVSSDNRP MAKELLMQIK  300
LHSSPTGDAT QRLSHYFVNA LEARMSGTGT HIHSALSTKR PSASDMVKAY QMYASACPFD  360
KFGIRFSINS IDNSAMEGVQ TLHIVEFGIR YGFKWPGLIY RLSRLPSGPP KLRITGIEYP  420
LPGLKLEQTG QCLARYCERF NVPFEFNAVV AKKWERIKVE DLKIRENEFV AVNCMFRFEN  480
LHDETVVLEN PRDSVLELIR KANPNVFVHG IINGNYDAAF FVTRFKEAMF HYSAMFDMLD  540
NTVARDDPIR LMYEEAIFGK EVMNVVACEG NERIERPHNY KKWQVRNTRA GFRQLSLDEQ  600
MIEKFKDMLR NEGYHKDFML HADGKWLLQG WKGRILYASS CWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-47	262	644	8	380	Protein SCARECROW
5b3h_A	1e-47	262	644	7	379	Protein SCARECROW
5b3h_D	1e-47	262	644	7	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Q6LLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172219.1	0.0	scarecrow-like protein 14
Refseq	XP_020964236.1	0.0	scarecrow-like protein 14
Refseq	XP_020964237.1	0.0	scarecrow-like protein 14
Refseq	XP_020964238.1	0.0	scarecrow-like protein 14
Refseq	XP_020964239.1	0.0	scarecrow-like protein 14
Refseq	XP_029151172.1	0.0	scarecrow-like protein 14
Refseq	XP_029151173.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-172	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A444Y8B1	0.0	A0A444Y8B1_ARAHY; Uncharacterized protein
STRING	XP_004505854.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-173	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]