PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PRX0Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 314aa    MW: 34967.7 Da    PI: 6.5449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PRX0ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05131150120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C+k+F+r  n++ H+
  Araip.PRX0Z 131 FSCTVCNKMFNRFNNMQMHM 150
                  89*****************9 PP
2zf-C2H213.80.00017216238123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  + + ++H +++
  Araip.PRX0Z 216 FGCRKCGKPFAVRGDWRTHEKNC 238
                  56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.71E-5124153No hitNo description
PROSITE profilePS501579.889131158IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-5131150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-5199236No hitNo description
Gene3DG3DSA:3.30.160.607.2E-5202236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQTHHHSFSS YISSCGSSST TSPFLDNPED ADVVLLDDEE ASISLSLGPP GQHHNPKIST  60
TSPLLLQHNP NCDDDQSGVT VALHIGLPST TTTTAPNTTT TISTTTSKTD SLQGQYWIPS  120
PAQILIGPTQ FSCTVCNKMF NRFNNMQMHM WGHGSQYRKG PESLRGAKPA SSMLRLPCYC  180
CAEGCKNNIE HPRSRPLKDF RTLQTHYKRK HGAKPFGCRK CGKPFAVRGD WRTHEKNCGK  240
LWFCICGSDF KHKRSLKDHV RAFGDGHAPH TVESCDQFVD EEEDDYELDD DDDLDLEDNN  300
NNNSNGNQGV FSFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PRX0Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150436e-32AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020959192.10.0zinc finger protein WIP6-like
RefseqXP_025650926.10.0zinc finger protein WIP6
SwissprotQ9FX681e-118ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A444Z3C90.0A0A444Z3C9_ARAHY; Uncharacterized protein
STRINGXP_007153349.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-115C2H2-like zinc finger protein