PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.PLB46

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 1092aa MW: 122886 Da PI: 5.9911

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.PLB46	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.8	3e-51	74	174	4	104
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+yw+ Araip.PLB46 74 AQHRWLRPAEICEILRNYRMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWM 171 49************************************************************************************************ PP CG-1 102 Lee 104 Le Araip.PLB46 172 LEP 174 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.788	67	198	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.4E-66	70	435	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.2E-44	73	174	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.8E-7	528	617	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.02E-16	531	617	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.0E-6	531	610	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	3.3E-17	708	825	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.6E-6	712	790	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.13E-17	721	823	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.38E-13	725	823	No hit	No description
PROSITE profile	PS50297	17.926	726	823	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.603	731	763	IPR002110	Ankyrin repeat
SMART	SM00248	3200	731	760	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.125	764	796	IPR002110	Ankyrin repeat
SMART	SM00248	0.0047	764	793	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	8.096	904	933	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0026	906	924	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence Send to blast
MAERPSFGLG PRLVTENGFR YLDLRLGRGF EKAELKLVRG EASLIAFRQL YIAMNDMEFD 60 RCWFNDFQQL QFEAQHRWLR PAEICEILRN YRMFQITSEP HNRPPSGSLF LFDRKVLRYF 120 RKDGHNWRKK KDGKTVKEAH EKLKVGSVDV LHCYYAHGEE NENFQRRSYW MLEPFCTGNK 180 TNTGGNIDSY DVSSDSQRTP SPSSGLPTNY SNLPSLSTDS MSPASSLASL REDADSEEIH 240 QASSRLHTLN ESQHMRNGHP TDKVDTGDRG QSSISGDYIP VVPAERFGGS DTTYIDGQKA 300 HSMASWDTVL KQCNAELQSD PSFVPFSSIP SSLIGNTVEQ ERNDFGDLLG SKSSLTEEAG 360 SSQSIQSNWQ IPFEESSGRL PNLTQSLSLE FGSDYISGLV GNETLNASSE IDPHLFNFHG 420 EPKEQHVQQH YPERHADGQS QYALQSNSLN KVLGEESLHH AFTAKRTLLD GDESLKKVDS 480 FSRWITKTLG EVDDLNMQSS AGISWGTDES GHVIDDSSLS PSLSQDQLFS INEFSPKWAY 540 AEVETEVVIV GAFLKYQPEV STSNWSCMFG EVEVPAEVLT NGILCCQAPP HKVGRVPFYV 600 TCSNRLACSE VREFDYREGF SGNVEFADFY NDSTERLLHL RLEEFLSSKP VCPSKQTFEN 660 DMEKRDVILK LIFLREEEEF SSKEEQHLES DTSSQKVKAH LFHRQIKEKL YSWLLHKVTE 720 SDKGPNVLDK DGQGVLHLAA ALGYDWAIQP ILTAGGGINF RDVNGWTALH WAASCGRERT 780 VVVLVTMGAN SGALTDPSPA FPTGRTASEL ASTNGHKGIS GFLGESLLTS HLESLTMDDQ 840 YKGGRQEISV TKVVQTVSER TATPVLYGDD MPDDPCLKDS LTAVRNATQA ADRTSKSGQG 900 DRLANAAATQ IQKKFRGWKK RKEFLIIRQR IVKIQGKLHR PSLRSDWAHV RGHQVRKSLK 960 SIIWSVGILE KVILRWRRKG SGLRGFKPDA LNKAPIQQSD PPKEDDYDFL KEGRKQSEEK 1020 FQKALSRVKS MVQYPEARAQ YRRLLNVVDD FRQTKACNMD LVNSEETVDG VENLIDIDML 1080 LDDDNFIPIA FD

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence Send to blast

MAERPSFGLG PRLVTENGFR YLDLRLGRGF EKAELKLVRG EASLIAFRQL YIAMNDMEFD  60
RCWFNDFQQL QFEAQHRWLR PAEICEILRN YRMFQITSEP HNRPPSGSLF LFDRKVLRYF  120
RKDGHNWRKK KDGKTVKEAH EKLKVGSVDV LHCYYAHGEE NENFQRRSYW MLEPFCTGNK  180
TNTGGNIDSY DVSSDSQRTP SPSSGLPTNY SNLPSLSTDS MSPASSLASL REDADSEEIH  240
QASSRLHTLN ESQHMRNGHP TDKVDTGDRG QSSISGDYIP VVPAERFGGS DTTYIDGQKA  300
HSMASWDTVL KQCNAELQSD PSFVPFSSIP SSLIGNTVEQ ERNDFGDLLG SKSSLTEEAG  360
SSQSIQSNWQ IPFEESSGRL PNLTQSLSLE FGSDYISGLV GNETLNASSE IDPHLFNFHG  420
EPKEQHVQQH YPERHADGQS QYALQSNSLN KVLGEESLHH AFTAKRTLLD GDESLKKVDS  480
FSRWITKTLG EVDDLNMQSS AGISWGTDES GHVIDDSSLS PSLSQDQLFS INEFSPKWAY  540
AEVETEVVIV GAFLKYQPEV STSNWSCMFG EVEVPAEVLT NGILCCQAPP HKVGRVPFYV  600
TCSNRLACSE VREFDYREGF SGNVEFADFY NDSTERLLHL RLEEFLSSKP VCPSKQTFEN  660
DMEKRDVILK LIFLREEEEF SSKEEQHLES DTSSQKVKAH LFHRQIKEKL YSWLLHKVTE  720
SDKGPNVLDK DGQGVLHLAA ALGYDWAIQP ILTAGGGINF RDVNGWTALH WAASCGRERT  780
VVVLVTMGAN SGALTDPSPA FPTGRTASEL ASTNGHKGIS GFLGESLLTS HLESLTMDDQ  840
YKGGRQEISV TKVVQTVSER TATPVLYGDD MPDDPCLKDS LTAVRNATQA ADRTSKSGQG  900
DRLANAAATQ IQKKFRGWKK RKEFLIIRQR IVKIQGKLHR PSLRSDWAHV RGHQVRKSLK  960
SIIWSVGILE KVILRWRRKG SGLRGFKPDA LNKAPIQQSD PPKEDDYDFL KEGRKQSEEK  1020
FQKALSRVKS MVQYPEARAQ YRRLLNVVDD FRQTKACNMD LVNSEETVDG VENLIDIDML  1080
LDDDNFIPIA FD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.PLB46

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	6e-44	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179996.2	0.0	LOW QUALITY PROTEIN: calmodulin-binding transcription activator 2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A445BAK6	0.0	A0A445BAK6_ARAHY; Uncharacterized protein
STRING	GLYMA15G05900.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]