PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PGX8V
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 546aa    MW: 64180.1 Da    PI: 10.143
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PGX8VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-16128173147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+ +  gR++k+c++rw++ 
      Araip.PGX8V 128 RGHWRPSEDSKLKELVALHGPQNWNLIAQNLE-GRSGKSCRLRWFNQ 173
                      899*****************************.***********996 PP
2Myb_DNA-binding54.23.4e-17180223146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
      Araip.PGX8V 180 KNPFSEEEEERLMEAHRVYGKK-WAMIARLFP-GRTDNAIKNHWHV 223
                      689*******************.*********.***********96 PP
3Myb_DNA-binding54.23.4e-17355398146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
      Araip.PGX8V 355 KNPFSEEEEERLMEAHRVYGKK-WAMIARLFP-GRTDNAIKNHWHV 398
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.545123174IPR017930Myb domain
SMARTSM007173.3E-14127176IPR001005SANT/Myb domain
PfamPF002495.1E-16128173IPR001005SANT/Myb domain
SuperFamilySSF466898.03E-28128221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-25129181IPR009057Homeodomain-like
CDDcd001673.60E-12131172No hitNo description
PROSITE profilePS5129425.424175229IPR017930Myb domain
SMARTSM007171.4E-14179227IPR001005SANT/Myb domain
PfamPF002496.1E-14180222IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-21182227IPR009057Homeodomain-like
CDDcd001676.74E-6191222No hitNo description
SuperFamilySSF466891.46E-21338406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-8339362IPR009057Homeodomain-like
PROSITE profilePS5129425.424350404IPR017930Myb domain
SMARTSM007171.4E-14354402IPR001005SANT/Myb domain
PfamPF002496.1E-14355397IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-17363398IPR009057Homeodomain-like
CDDcd001676.74E-6366397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MRSCPPPTST ISHHSPYSMG VFYTDMGSLS LRTLSSSTTL SSSQKRSNYY TKEMHNHNND  60
NGRGTTTSSL FPFHHQFMRD CRSRNFQEHP CNNKDSDYDS KNPNEEKYCM MSSGKEVNSS  120
EKSKVCARGH WRPSEDSKLK ELVALHGPQN WNLIAQNLEG RSGKSCRLRW FNQLDPRIKK  180
NPFSEEEEER LMEAHRVYGK KWAMIARLFP GRTDNAIKNH WHVIMARYYR EQKSFPSRTN  240
RKIRRYNNNN RQSLLFSRNN ITTSTTSGYY GGQFINGSAT ITHMATACWR QQQDNNNEED  300
PNGFYNQQQF PFDYCFFSAG KSCRLRWFNQ LDPKNPFRKS CRLRWFNQLD PRIKKNPFSE  360
EEEERLMEAH RVYGKKWAMI ARLFPGRTDN AIKNHWHVIM ARYYREQKSF PSRTNRKIRR  420
YNNNNRQSLL FSRNNITTST TSGYYGGQFI NGSATITHMA TACWRQQQDN NNEEDPNGFY  480
NQQQFPFDYC FFSAGIIGII LMTTVMNIII FVILIPNNIS IKCKCQKTTT FTVTHRVPLQ  540
QLQQHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-311284027106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PGX8V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020959157.10.0transcription factor MYB105-like
TrEMBLA0A444Z4M20.0A0A444Z4M2_ARAHY; Uncharacterized protein
STRINGXP_007157609.14e-78(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-57myb domain protein 105