PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PEC40
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 392aa    MW: 43383.7 Da    PI: 4.5771
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PEC40genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.8e-072262438
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 r C+++ + +   +C+ ++ +lC  C +  H        H+
  Araip.PEC40 22 RACDTCRSAPSVVYCRADSAYLCSACDDRVHAAnrvasrHE 62
                 57**************************9995555666665 PP
2zf-B_box28.82.5e-0964109342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++ + C+ +   lC +C + +H+       H +vp+
  Araip.PEC40  64 VWVCEACERAPAAFLCRADAASLCSSCDSDIHSAnplagrHHRVPI 109
                  689*****************************66899999877775 PP
3CCT69.49.5e-24323366144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R a++lRYkeK+ktRkFeKkirYesRKa+Ae+RpR+KGrF+k++
  Araip.PEC40 323 RVARVLRYKEKKKTRKFEKKIRYESRKAYAETRPRIKGRFAKRT 366
                  89****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-71966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2811966IPR000315B-box-type zinc finger
CDDcd000212.39E-72266No hitNo description
PfamPF006434.1E-52263IPR000315B-box-type zinc finger
PROSITE profilePS5011910.87962109IPR000315B-box-type zinc finger
PfamPF006431.6E-763109IPR000315B-box-type zinc finger
CDDcd000211.59E-765109No hitNo description
SMARTSM003364.0E-867109IPR000315B-box-type zinc finger
PfamPF062031.7E-17323365IPR010402CCT domain
PROSITE profilePS5101716.351323365IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLREGTNINI GGSCSSTNNW SRACDTCRSA PSVVYCRADS AYLCSACDDR VHAANRVASR  60
HERVWVCEAC ERAPAAFLCR ADAASLCSSC DSDIHSANPL AGRHHRVPIL PISGCSSLIR  120
EEEQKEGEPE RENDHVFEIE GTINNQNYNH GCEMEDEECE GDDEAEAASW LLPHPVRMGG  180
NDESDGFLFC GGDGDGDGDE YLEFVDCDDD NNNNNRFSCL DHDQDQDMLH NYGGDHNQGN  240
NHDSVVPVQM QQCFEFDSSK VGAGFSYNGS LSQSVSLSSM EVGVVPESTL SDVSISHSKA  300
QIGTSEQFPP MPMPSPLLTP MDRVARVLRY KEKKKTRKFE KKIRYESRKA YAETRPRIKG  360
RFAKRTDVEA EVDQMLSSTL MSEAGYGIVP SF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PEC40
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179281.10.0zinc finger protein CONSTANS-LIKE 2-like
RefseqXP_025682878.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-108COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A445B2920.0A0A445B292_ARAHY; Uncharacterized protein
STRINGGLYMA13G07030.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-73CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]