PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.PBJ1N | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 180aa MW: 20443.8 Da PI: 4.4119 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.4 | 1.2e-18 | 93 | 173 | 2 | 83 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 fY+ YAk+ GF v k+k ++ rn+ it+++fvC ++g+re + + + r+++aetr+gC+a+++v++++ +g+w ++ +++ Araip.PBJ1N 93 FYSLYAKMNGFAVGKNKIWQNVRNE-ITQQEFVCFRQGFREMGSIN-DGIREPKAETRCGCEAEMRVHMHSkSGRWIISYFQT 173 9*******************97776.****************9999.99********************999******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-16 | 93 | 173 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEGESVVDEC YRPLFAEEEG GDGSDAFGPG GDKFGEEVED GELGENFADS FFDNWEERAV 60 DGIAELGCIN FKEITAKEIM MCHFPDRSVA FLFYSLYAKM NGFAVGKNKI WQNVRNEITQ 120 QEFVCFRQGF REMGSINDGI REPKAETRCG CEAEMRVHMH SKSGRWIISY FQTQPRVAGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.PBJ1N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016195840.1 | 1e-108 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444ZKC0 | 1e-106 | A0A444ZKC0_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3613 | 6 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-10 | FAR1-related sequence 5 |