PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.P38YN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 20467.3 Da PI: 10.6527 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Araip.P38YN 118 WKCDKCSKRYAVQSDWKAHSKTC 140 58*****************9998 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00092 | 148 | 166 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + Araip.P38YN 148 DCGTIFSRRDSFITHRAFC 166 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.06E-5 | 105 | 139 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-5 | 106 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MLIPHHQNQN PTTTPPPSLK RKRNLPGNPG ISGSGSNSLI PKDTNGYKQG FQRDQNLQLH 60 RRGHNLPWKL KQRTNKEPKK RVYVCPEKTC VHNHPSRALG DLTGIKKHFC RKHGEKKWKC 120 DKCSKRYAVQ SDWKAHSKTC GTREYKCDCG TIFSRRDSFI THRAFCDALA EETARHQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 114 | 178 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 114 | 178 | 3 | 67 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.P38YN |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193276.1 | 1e-109 | zinc finger protein MAGPIE | ||||
Refseq | XP_025643566.1 | 1e-109 | zinc finger protein MAGPIE | ||||
Swissprot | Q9ZWA6 | 1e-90 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A445DZQ2 | 1e-126 | A0A445DZQ2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G36960.1 | 8e-93 | (Glycine max) | ||||
STRING | XP_007149800.1 | 5e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 4e-87 | C2H2 family protein |
Publications ? help Back to Top | |||
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