PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.P1CBC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Nin-like
Protein Properties Length: 573aa    MW: 63372.6 Da    PI: 6.9908
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.P1CBCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK93.71.3e-29263313252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  Araip.P1CBC 263 EKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKV 313
                  79***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.405245333IPR003035RWP-RK domain
PfamPF020423.8E-27265313IPR003035RWP-RK domain
SuperFamilySSF542771.24E-19476564No hitNo description
Gene3DG3DSA:3.10.20.2404.6E-22477559No hitNo description
SMARTSM006661.7E-16480562IPR000270PB1 domain
PROSITE profilePS5174516.597480562IPR000270PB1 domain
PfamPF005647.4E-15483560IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSQCLSNNKR AALTEIIDVS RAVCRAHSLP LALTWIPCYY SEGIGDEASR IRIKDGCKIP  60
GEKTVLCIEE SACYINDIVV GGFVRACVEH YLEEGQGVAG KALQSNRPFF YSDVKAYNIS  120
EYPLVHHARK YKLNAAVAVR LRSIHTNDDD YIIEFFLPVI MNGSQEQQLL LDNLSDTMQR  180
MCQSLRIVSD DELYGIEGSQ VQFSKEEGSS FFSMSRGNSH MAPEGDHDSV QPMSLTNNET  240
EAAHNQAMDG SRKQTEKKKS TVEKNVSLSV LQQYFSGSLK DAAKSLGVCP TTLKRICRQH  300
GIARWPSRKI NKVNRSLKKI QTVLDSVQGV EGGLKFDPYK GGFIPGGSSN QEINAHKSSL  360
FRKKCSGKYP DPASKDAVTV SPASGSKDSK PIGMDDGGLR QEPFPVSILE SSRCDIVYHS  420
PNTLVADEME NYLNGADKLG EHHNPTTSSM SDSSNGSGSR KFENRKHLKA KSPCVDKGSK  480
IIVKAAYKED MIRFKFDPAA GCLQLYEQVA TRFKLQIGSF QLKYLDDEEE WVRMVNDSDL  540
EECIEILDDL GTRAVKFLVS DMPSGLSSSG SNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.P1CBC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020972784.10.0protein NLP9
SwissprotO228641e-164NLP8_ARATH; Protein NLP8
TrEMBLA0A445A8Y70.0A0A445A8Y7_ARAHY; Uncharacterized protein
STRINGGLYMA12G05390.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-133Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]