PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NN61D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 20394.5 Da    PI: 10.1015
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NN61DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-284292151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+snrqvt+skR+ngilKKA+E+ vLCda+v++iif+ +gk+++y+s
  Araip.NN61D 42 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYIS 92
                 79***********************************************86 PP
2K-box65.42.1e-22104166163
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63 
                  y+k+sgk+l++ak+e+l+ e++++kke++ +q e+Rhl+Ged++sL++keL+ Le++Le++l+
  Araip.NN61D 104 YHKTSGKRLWDAKHENLNSEIERIKKENDGMQIELRHLKGEDINSLNYKELMGLEEALENGLQ 166
                  7999*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-383493IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.7213494IPR002100Transcription factor, MADS-box
CDDcd002654.77E-3935113No hitNo description
SuperFamilySSF554555.62E-3535129IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003690IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273656IPR002100Transcription factor, MADS-box
PfamPF003195.0E-224390IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-275671IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-277192IPR002100Transcription factor, MADS-box
PfamPF014864.4E-13115166IPR002487Transcription factor, K-box
PROSITE profilePS5129710.196117176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
YIPSPPLLRL QATTSLIWRH EKQRRKKLEK KIEMGRGKIE IKRIENSSNR QVTYSKRKNG  60
ILKKAKEITV LCDAQVSLII FAASGKMHDY ISPSTTLIDI LERYHKTSGK RLWDAKHENL  120
NSEIERIKKE NDGMQIELRH LKGEDINSLN YKELMGLEEA LENGLQNGSV QDVQEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-1834133195MEF2C
5f28_B7e-1834133195MEF2C
5f28_C7e-1834133195MEF2C
5f28_D7e-1834133195MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NN61D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953681e-133BT095368.1 Soybean clone JCVI-FLGm-7A22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935244.14e-92floral homeotic protein PMADS 2 isoform X1
RefseqXP_025613621.14e-92floral homeotic protein PMADS 2
SwissprotQ0HA256e-79MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A445CDJ03e-91A0A445CDJ0_ARAHY; Uncharacterized protein
STRINGXP_007161433.19e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.19e-67MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]