PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.NML6W | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LSD | ||||||||
Protein Properties | Length: 109aa MW: 12061.7 Da PI: 8.3812 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.8 | 1e-14 | 59 | 83 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GAp VRC++C +V Araip.NML6W 59 CGGCAVLLMYPYGAPQVRCSSCRFV 83 **********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.0E-11 | 56 | 84 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.6E-12 | 59 | 83 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MMQLDEIKTQ REVGEDDDGP PPGWQPIHTP PPQPPPQSQS RSRSPPRCPS TDQVGQVKCG 60 GCAVLLMYPY GAPQVRCSSC RFVTEIGAHN KRPPWSEQQR KPTLPKTAC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.NML6W |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020975133.1 | 2e-74 | protein LOL2 isoform X2 | ||||
Refseq | XP_025638239.1 | 2e-74 | protein LOL2 isoform X2 | ||||
Swissprot | O65426 | 1e-19 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A445DR46 | 2e-56 | A0A445DR46_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G31600.1 | 4e-32 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 5e-22 | lsd one like 2 |