PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.NH5RI

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 407aa MW: 46217.9 Da PI: 7.242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.NH5RI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.2	7.4e-10	110	155	46	91
FAR1 46 kktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + e+ r++r e+rt+Ckaklk+ + +++w+v ++ eHnHelap Araip.NH5RI 110 HP-ERVREERLESRTDCKAKLKIYYDVqRSVWKVRTIFDEHNHELAP 155 33.78899**************99989*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-7	110	155	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.384	252	288	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.5E-4	260	280	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-7	263	290	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDFNGMFGAE VEQSDENSSD GYCGRYYASD DEGGEEGDPT GHREDEHGNF SGGASHAGDG 60 GKIRPVVAED FLGREFVGEE DAYLAYKEFA RTRGFGVRKG DVGHPKHYDH PERVREERLE 120 SRTDCKAKLK IYYDVQRSVW KVRTIFDEHN HELAPTMFSH LLPSHRKMNR VVKDYRNSEV 180 TAQFYSTYYS PVLTTGLDSI ELFASKLYTR AVFREVKKQI KGVATLLFHG RDNISTTVVY 240 KFSRMGAPGR IHKVLFDPDD KKIQCDCSMW NSEGIPCSHI FCVMKHEGLD QIPDSLIMRR 300 WCKNAKDSSR MPVTTRPGHE GRMLRYATLC SATSLVARLG SEEGEDFEFA RESIASVIEK 360 LRHRFYERAG GQPGMSAWSP MKDPVVARTK GAPKRTKDFD LSSQPDF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDFNGMFGAE VEQSDENSSD GYCGRYYASD DEGGEEGDPT GHREDEHGNF SGGASHAGDG  60
GKIRPVVAED FLGREFVGEE DAYLAYKEFA RTRGFGVRKG DVGHPKHYDH PERVREERLE  120
SRTDCKAKLK IYYDVQRSVW KVRTIFDEHN HELAPTMFSH LLPSHRKMNR VVKDYRNSEV  180
TAQFYSTYYS PVLTTGLDSI ELFASKLYTR AVFREVKKQI KGVATLLFHG RDNISTTVVY  240
KFSRMGAPGR IHKVLFDPDD KKIQCDCSMW NSEGIPCSHI FCVMKHEGLD QIPDSLIMRR  300
WCKNAKDSSR MPVTTRPGHE GRMLRYATLC SATSLVARLG SEEGEDFEFA RESIASVIEK  360
LRHRFYERAG GQPGMSAWSP MKDPVVARTK GAPKRTKDFD LSSQPDF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.NH5RI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020963420.1	1e-172	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YAB8	1e-171	A0A444YAB8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF845	4	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-16	FAR1-related sequence 5