PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NEN8H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 456aa    MW: 51746.6 Da    PI: 7.165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NEN8HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.8e-19147193148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l ++vkq+G++ W+ Ia+++  gR +kqc++rw+++l
      Araip.NEN8H 147 KGQWTPEEDRKLEKLVKQHGTRKWSQIAEKLE-GRAGKQCRERWHNHL 193
                      799*****************************.*************97 PP
2Myb_DNA-binding52.89e-17200241245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+ +lv+ +++ G++ W+ Ia++++ gRt++++k++w+
      Araip.NEN8H 200 DGWSEEEERILVETHAKVGNR-WAEIAKHIP-GRTENSIKNHWN 241
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.581142197IPR017930Myb domain
SuperFamilySSF466891.95E-30144240IPR009057Homeodomain-like
SMARTSM007174.6E-17146195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-28148200IPR009057Homeodomain-like
CDDcd001677.48E-16150193No hitNo description
PfamPF139213.9E-19150207No hitNo description
SMARTSM007176.2E-16198246IPR001005SANT/Myb domain
PROSITE profilePS5129420.382198248IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-21201246IPR009057Homeodomain-like
CDDcd001671.80E-12202244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNGNSSSNSV PFLHHEYGGN SMCRLGLPLT AIDRFLCSQQ QSQVLHNDDS VFDEDFQTRF  60
SNCYYGGGGS NNSYYKLVWP NCTTHQEASI VVHDNNQQEG FNNWLQQIPT LCHNQEDVHQ  120
ALGKTNNVKV VGRNPKKASS SSVSFIKGQW TPEEDRKLEK LVKQHGTRKW SQIAEKLEGR  180
AGKQCRERWH NHLRPDIKKD GWSEEEERIL VETHAKVGNR WAEIAKHIPG RTENSIKNHW  240
NATKRRQNSR RKNKKPSSSS TNSNNNGKPQ SSILQDYIRS QTLIGTNNIN APITTTNSTP  300
TITSESESTT NISDNNNPYY SSPTIIAESY DDELLFMQQL FKENNQNVNG DGIGKNPSDE  360
CGDGFVHYSN NYYYLSNPWN MHNPITNNNN NNGYLDSDLY ISQLMNNGGA TTSSSSSLFN  420
DHGAYEKNQN MDFHCSAAVK KREIDLLEFV STHHQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-421452472104C-Myb DNA-Binding Domain
1msf_C1e-421452472104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NEN8H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204369.10.0transcription factor MYB118-like
RefseqXP_025627745.10.0transcription factor MYB119-like
TrEMBLA0A445AMT20.0A0A445AMT2_ARAHY; Uncharacterized protein
STRINGXP_004500264.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-60myb domain protein 119