PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NCG35
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22348.3 Da    PI: 8.5236
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NCG35genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +rienk+nrqvtfskRr g+lKKA+ELSvLCdaeva+iifss+gkl+ yss
  Araip.NCG35  9 ERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSS 59
                 69***********************************************96 PP
2K-box36.42.2e-13591233498
        K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  +  h++Ge+Le+L +keL++Le+q+e+ l + R+  ++ l++   el +k +e qe nk+L+ kl
  Araip.NCG35  59 SSEHFQGEELEPLGMKELMNLEKQVERTLAQARQLHMKKLITRQAELSEKVHEDQELNKKLKFKL 123
                  5579*********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.413161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-28263IPR002100Transcription factor, MADS-box
CDDcd002651.30E-35260No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-30323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-302338IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.43133129IPR002487Transcription factor, K-box
PRINTSPR004042.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-859123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSS RGKLFQYSSS  60
EHFQGEELEP LGMKELMNLE KQVERTLAQA RQLHMKKLIT RQAELSEKVH EDQELNKKLK  120
FKLRDEFPDL IAEHNNPIHE LNEVQAINQF QSETLLNNTR MFEHHNQEGK ASGTRQQDGQ  180
SSHDRNNNGW LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21161161MEF2C
5f28_B1e-21161161MEF2C
5f28_C1e-21161161MEF2C
5f28_D1e-21161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NCG35
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025656700.11e-129truncated transcription factor CAULIFLOWER D
SwissprotQ8LLR15e-40MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A444YXY61e-129A0A444YXY6_ARAHY; Uncharacterized protein
STRINGGLYMA16G32540.17e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.12e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]