PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.NA6EQ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 1227aa MW: 135562 Da PI: 9.6391

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.NA6EQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3e-08	140	175	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e +++a +++G++ Wk+++ + +R+ +++ Araip.NA6EQ 140 QWSKEELEHFYEAYRKYGKD-WKKVSLAVR-NRSVEMV 175 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.07	136	189	IPR017884	SANT domain
SuperFamily	SSF46689	2.02E-9	137	184	IPR009057	Homeodomain-like
SMART	SM00717	0.0018	137	185	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	140	174	IPR009057	Homeodomain-like
Pfam	PF00249	4.2E-7	140	175	IPR001005	SANT/Myb domain
CDD	cd00167	3.07E-5	141	175	No hit	No description
SMART	SM01135	2.2E-38	699	791	IPR033471	DIRP domain
Pfam	PF06584	1.8E-25	701	790	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1227 aa Download sequence Send to blast
MLSLCHSRLH LLLKDSNQIP PQNHCYAFNS QFQFSTIDGI VKCASYIQSQ MDFRAILFLI 60 HVVFREKRDS ISVFGHLEQT LEPQIMAPSK KSKSVNKRFP NVREAASSKE KNAENASKNK 120 QKASPGAQKK RKLADMLGPQ WSKEELEHFY EAYRKYGKDW KKVSLAVRNR SVEMVEALYT 180 MNRAYLSLPE GTASVVGLIA MMTDHYSVLG GSDSEKESNE DAEVSKRSQK RLRRKQMNDH 240 KTLEGPFSDH SQSQSVASGD GCLLLLKTRN SGLTPHAVRK RTPRVPISHS IGKDNAEKLF 300 SSARQGRKQM VDTNDVTHKI ALALAEASQR GGSSKISASP NKRAAPSPSK KSGKKVKSEI 360 AGSKFCSSDL DGGSSELSLG STEGDNGDYS RKTVNWISRE NTGKGRNREK RVKHTGNNLE 420 PEENLNMHLD EIKEASSGTD DGKNLNFIKS NFSTDFANAK NPSPSSYKGS KKRSKKLQVE 480 KDEASAFDAL KTLADLSLMM PVTNADSESS AQVREGNHDV EESKVKMHKA TKIERTASSA 540 LGKIFSDGAA IPEGEGVYQL NAGIRKRKQK SFSLNNDETH TDSHLSGSQK TKDTDEVKKS 600 MVKGKRSSVS TTYPRQPKLV KSPGKMSSSG NDKREGDDST SSPIKVSSAN QVGQVNKGRP 660 RRKMGKPKPM VEGDPVLSGN IFSSQHNKSC ASVQNSSSSP KREFVEYLDH VGLGHVPRLT 720 RIEWGVIRSS LGKPRRFSEQ FLIEEKQKLN QYRESVRSHY AEVLAGTKEG LPTDLARPLI 780 VGQRVIAIHP KTREIHNGSI LTVDHCRCLV QFDQRELGAE FVMDIDCMPM YPFENMPTSM 840 ARHNIAHCRI NETFNDLRLN GKLKQEIIAD HTILSPSENI DTTKGLHILP TKHGSSTLSN 900 QGVSPNSKSQ VKAMCNQICN AQQAPSLQPL PFEHVHSKEA DISAISELTR ALDKKELVMS 960 ELKVMNDGVS ESQKYGDNSL KDSEPFKRSY ASLIKHLTEV SSALFRLRQR NTYQGSTTEL 1020 SLKPIANYDD PGGQASSSNC SACHNQESIP LGHIAEIVES SRRKARAMVV QATQAMSIFM 1080 KTDSKVEKIE DAINFINNQL SVDDPAAPAT NSLPADSIHV TLASQDQLTG NTLNPSVNCH 1140 AQDAEFNSSS DQNEMKIPSE LISHCLATLL MIQKCTERQF PPADVAQVLD SAVTSLQPFC 1200 SKNLPIYGEI QKCMGIIRNQ ILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1227 aa Download sequence Send to blast

MLSLCHSRLH LLLKDSNQIP PQNHCYAFNS QFQFSTIDGI VKCASYIQSQ MDFRAILFLI  60
HVVFREKRDS ISVFGHLEQT LEPQIMAPSK KSKSVNKRFP NVREAASSKE KNAENASKNK  120
QKASPGAQKK RKLADMLGPQ WSKEELEHFY EAYRKYGKDW KKVSLAVRNR SVEMVEALYT  180
MNRAYLSLPE GTASVVGLIA MMTDHYSVLG GSDSEKESNE DAEVSKRSQK RLRRKQMNDH  240
KTLEGPFSDH SQSQSVASGD GCLLLLKTRN SGLTPHAVRK RTPRVPISHS IGKDNAEKLF  300
SSARQGRKQM VDTNDVTHKI ALALAEASQR GGSSKISASP NKRAAPSPSK KSGKKVKSEI  360
AGSKFCSSDL DGGSSELSLG STEGDNGDYS RKTVNWISRE NTGKGRNREK RVKHTGNNLE  420
PEENLNMHLD EIKEASSGTD DGKNLNFIKS NFSTDFANAK NPSPSSYKGS KKRSKKLQVE  480
KDEASAFDAL KTLADLSLMM PVTNADSESS AQVREGNHDV EESKVKMHKA TKIERTASSA  540
LGKIFSDGAA IPEGEGVYQL NAGIRKRKQK SFSLNNDETH TDSHLSGSQK TKDTDEVKKS  600
MVKGKRSSVS TTYPRQPKLV KSPGKMSSSG NDKREGDDST SSPIKVSSAN QVGQVNKGRP  660
RRKMGKPKPM VEGDPVLSGN IFSSQHNKSC ASVQNSSSSP KREFVEYLDH VGLGHVPRLT  720
RIEWGVIRSS LGKPRRFSEQ FLIEEKQKLN QYRESVRSHY AEVLAGTKEG LPTDLARPLI  780
VGQRVIAIHP KTREIHNGSI LTVDHCRCLV QFDQRELGAE FVMDIDCMPM YPFENMPTSM  840
ARHNIAHCRI NETFNDLRLN GKLKQEIIAD HTILSPSENI DTTKGLHILP TKHGSSTLSN  900
QGVSPNSKSQ VKAMCNQICN AQQAPSLQPL PFEHVHSKEA DISAISELTR ALDKKELVMS  960
ELKVMNDGVS ESQKYGDNSL KDSEPFKRSY ASLIKHLTEV SSALFRLRQR NTYQGSTTEL  1020
SLKPIANYDD PGGQASSSNC SACHNQESIP LGHIAEIVES SRRKARAMVV QATQAMSIFM  1080
KTDSKVEKIE DAINFINNQL SVDDPAAPAT NSLPADSIHV TLASQDQLTG NTLNPSVNCH  1140
AQDAEFNSSS DQNEMKIPSE LISHCLATLL MIQKCTERQF PPADVAQVLD SAVTSLQPFC  1200
SKNLPIYGEI QKCMGIIRNQ ILALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	658	662	RPRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.NA6EQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025611505.1	0.0	protein ALWAYS EARLY 3 isoform X1
TrEMBL	A0A445AWZ1	0.0	A0A445AWZ1_ARAHY; Uncharacterized protein
STRING	GLYMA17G02741.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding