PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N5IED | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 191aa MW: 22005.8 Da PI: 6.2867 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.7 | 1.3e-25 | 86 | 176 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+Y+ GF +r+ k+ ++ g i+++tfvC++eg++e++ + t+++r+++++tr+gC a++++k+++ +gkw+v + eHnHel p Araip.N5IED 86 FYNKYSCIKGFATRQGKKVRN-IVGDIVRYTFVCNREGFKEKKWLEnTDRKREHKVVTRCGCMAEMRIKRKDgSGKWYVLLFIDEHNHELLP 176 9****************9998.7777**************999766478899999**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-23 | 86 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTSSSSKAED PWKWNVAMVE KFSQAQTDYA DEGEALFDLG TDREVVVGDL DCNNEGASVG 60 YIDMGGLRSE DVLLMEFNTP EEARGFYNKY SCIKGFATRQ GKKVRNIVGD IVRYTFVCNR 120 EGFKEKKWLE NTDRKREHKV VTRCGCMAEM RIKRKDGSGK WYVLLFIDEH NHELLPGKFV 180 DFLRSQENFR G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N5IED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020963428.1 | 1e-141 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444Y9W4 | 1e-134 | A0A444Y9W4_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9185 | 2 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-18 | FAR1-related sequence 5 |