PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N57VC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 507aa    MW: 58039.4 Da    PI: 7.863
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N57VCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.83.7e-1861147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w +++++l+H+H+++p
  Araip.N57VC  61 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISNVVLDHSHPCCP 147
                  6****************98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1561147IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186310346IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4312343IPR007527Zinc finger, SWIM-type
SMARTSM005750.001321348IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDDSTLDCQL NQGEVDYEFE SNEVPETLGC RSELFWPLSV VDDQFVPKVG MTFTTLEDAE  60
KFYRNYAKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISNVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH  180
IWVPIYLDHY FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD  240
AADFHTVIPC ATKSSIEAQF QDVYTHQKFR EVQAQFRGKA NCITRLTNSA LGYSVYEVGE  300
QVSSSIFNKF VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVKRR HTHIKSSHDE  360
PLLEPRSKRF DQLVFRSQNI CEFASESEEL TAILHRAYDN VMAEMESLKA KRKGTSSLSH  420
EDTNLESVNE LQSPPRIRTR GRLENRLGSK LDKQIANATK KKKTKVLSEI NLFDATSVVH  480
SNSSQYQRHV MNYQFRVPGA GDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N57VC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445ESL40.0A0A445ESL4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-28far-red elongated hypocotyls 3