PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N513L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 218aa    MW: 25994.8 Da    PI: 9.4993
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N513LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.18.9e-161791089
         FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                 +GF vrk++s+k+ ++++i + +fvC keg r+++k++   +  +r e r +C  kl ++  k  +k+e++++ +eHnH+l
  Araip.N513L  1 MGFGVRKQYSNKN-TDEKILSLRFVCAKEGVRKSDKRD-FLTVIPRLEIRANCLVKLGIRYIKdIEKYEIHDFFNEHNHPL 79
                 7**********99.7777*****************999.99999*****************9989**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-11179IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGFGVRKQYS NKNTDEKILS LRFVCAKEGV RKSDKRDFLT VIPRLEIRAN CLVKLGIRYI  60
KDIEKYEIHD FFNEHNHPLH LPQTTHMLAC QRKISQVQAR EIELTDDSEI TQRASFELMN  120
RQVGGRENIA YTHETNFKGA WDKLFNDYDL KENKRLMSLY KLKEKWARCY MSNAFTIDMR  180
NLKNCMKPNL NIIQFFNHFE GVVNDKRYNE LQGEFQSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N513L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986514.14e-73protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025616747.19e-73protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3PRH22e-49A0A2K3PRH2_TRIPR; Protein FAR1-related sequence 5-like
STRINGXP_004490690.14e-37(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-10FAR1-related sequence 5