PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N1TUI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 176aa MW: 20260.4 Da PI: 10.4445 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.4 | 6e-09 | 91 | 107 | 3 | 19 |
S---SGGGGTS--TTTT CS zf-CCCH 3 telCrffartGtCkyGd 19 ++lC+++++tG CkyG+ Araip.N1TUI 91 QPLCQYYMKTGSCKYGS 107 79**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.981 | 88 | 108 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 91 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MRINLHSRSE EHTQFHRKNL FILCSISFGF LVSAQWSGTT GPVRVPDLIH RRSGLELVSK 60 SRCGKLGWML KRNLIPKGLT RGGEYSERIG QPLCQYYMKT GSCKYGSSFK YNNPRQAGGS 120 ATPMSLNYKR GGDEDEFYIS IYKASYCSNG KRQMRIKIKY MNRRYGMYYV SSSLFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N1TUI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 2e-16 | C3H family protein |