PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.MY1RF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 124aa MW: 13956.4 Da PI: 6.0107 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.3 | 4.1e-29 | 72 | 121 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ Araip.MY1RF 72 PRLRWTPDLHLRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 121 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 68 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.559 | 68 | 124 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-13 | 72 | 122 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-21 | 72 | 122 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-9 | 73 | 121 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MEESHGSQCS KTSPSNLEEE EEEEEEDDDE CENKKNNGGG GGGCSSNSTV EENSNNNNDK 60 KKIRPYVRSK FPRLRWTPDL HLRFLHAVQR LGGQERATPK LVLQLMNIKG LSIAHVKSHL 120 QVIN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 73 | 121 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 73 | 121 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 73 | 121 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 73 | 121 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.MY1RF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016186617.1 | 2e-83 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0B2P2N2 | 5e-51 | A0A0B2P2N2_GLYSO; Putative Myb family transcription factor | ||||
TrEMBL | K7K3F7 | 5e-51 | K7K3F7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G31044.1 | 9e-52 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-34 | G2-like family protein |