PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MHR6K
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 550aa    MW: 62272.3 Da    PI: 7.9824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MHR6KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.5e-15385430454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h ++ErrRR+++N++f +Lr+l+P       +K++Ka+iL  ++eY+k+L
  Araip.MHR6K 385 SHVAAERRRREKLNEKFITLRSLVPYV-----TKMDKASILGDTIEYVKQL 430
                  799***********************8.....8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-358168IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-19380443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.498381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-20384443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-13384435No hitNo description
PfamPF000101.2E-12385430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MPSCSRVQSM LQAAVQSLHW TYTIFWQLSP QQRVLRWSDG FYNGEIKIRR TVEAIEANKS  60
SSNNEEASLQ RSNQLRDLYD LLLSDRHGDH VFAVDPPATP RPSTALSPED LSESEWYYLM  120
CVSFSFAPGV GLPGKAYARR QHVWLQGANE TDTKTFSRAI LAKSAHVKVK EDINVIKHVK  180
SFFIGDHHRP QPKHALSENS ASNPITEEAQ LLLDSETATL PQSKLKEPVV AEDGSRAGSP  240
DDGSNRLNSA GLELLPPESA ASLELLHGDE YDNNSEAETS HLCTEQEGHT HYSKTVSTIL  300
EGSSGHRPDA VCGLLSFQSA FATWSSRAYN CHQVTVVENP QRLLKNILFR VPYLHRKQNR  360
HNSAETLEQL ERTIMPSPQD DLISSHVAAE RRRREKLNEK FITLRSLVPY VTKMDKASIL  420
GDTIEYVKQL HEKVKKLEEE DQRRRSGKKR KERAVEVSVI EGEILLEVEC MNREGLLLDL  480
MRTLKEVGIE VRGVKSSFKG DDERVFVVEL RGKVKENGKR NNNNKKNKKI SIVEVKKVLH  540
NIINPHHHPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14385440863Transcription factor MYC2
5gnj_B1e-14385440863Transcription factor MYC2
5gnj_E1e-14385440863Transcription factor MYC2
5gnj_F1e-14385440863Transcription factor MYC2
5gnj_G1e-14385440863Transcription factor MYC2
5gnj_I1e-14385440863Transcription factor MYC2
5gnj_M1e-14385440863Transcription factor MYC2
5gnj_N1e-14385440863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389394ERRRRE
2390395RRRREK
3441450QRRRSGKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MHR6K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204619.10.0basic helix-loop-helix protein A-like
RefseqXP_025657999.10.0basic helix-loop-helix protein A
SwissprotE3SXU41e-151BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A444YGY60.0A0A444YGY6_ARAHY; Uncharacterized protein
STRINGGLYMA19G33770.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-112bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]