PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.M6DPT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 131aa MW: 15480.8 Da PI: 4.0809 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.6 | 8.3e-08 | 74 | 119 | 1 | 47 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fYn+Y+ F +rk+ + ++g+i++r++vC+keg r+ + + Araip.M6DPT 74 QFYNAYSCWHRFIMRKDDVVRD-NQGRIISRQLVCNKEGWRNMRYLD 119 6****************99998.8888*************9998777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-5 | 74 | 128 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MSINEDDVKN DSDNDLGDDF DYQPNAEDDA EDDHVDLLDS TSKSEEVCGV KRIADLMVED 60 IWNLEFRTED EACQFYNAYS CWHRFIMRKD DVVRDNQGRI ISRQLVCNKE GWRNMRYLDL 120 DDRSREARSL T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.M6DPT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637177 | 0.0 | HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015953982.1 | 1e-84 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020992779.1 | 3e-86 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025702739.1 | 2e-84 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445ANA3 | 2e-86 | A0A445ANA3_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-09 | FAR1 family protein |