PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M2V13
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 360aa    MW: 40669.8 Da    PI: 9.8526
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M2V13genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789e-2582125144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Araip.M2V13  82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 125
                  79***************************************986 PP
2QLQ53.47.9e-191751236
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 +FT++Q+q+L++Q+l+yKy+a++  vPp+Ll+ ++
  Araip.M2V13 17 PFTPSQWQELEHQALIYKYMASGTTVPPDLLFTLK 51
                 8*****************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.0E-111652IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.5031752IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-141749IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.71982126IPR014977WRC domain
PfamPF088791.2E-2083125IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMNNSSSSSS SRNSRFPFTP SQWQELEHQA LIYKYMASGT TVPPDLLFTL KRSHFNLPHH  60
QPAQQQHFGW NYLEMGLGRK IDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGKNRS  120
RKPVELLKTT TNTSNSASSA TTHTIISSSS ITKTNEHPQQ RSCYNNGSNL LHQHSFVFNS  180
HTPSRSSTSA VAFSFPDNTA PSRSHNIRQT GKGANYAGLS KVRRYVYGVK EEADERAFFK  240
EPSSTLKSFS GSSMDDSWQL TPLTISTSSS SSSTKQRSCT SLSNNSDYSY LQLESLNERS  300
KNQEQDQKTT VHSFFDEWPH KGRGFDSDDK CSSTTKLSIS IPSTSFHDFP VLQFKNPPGC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M2V13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020974545.10.0growth-regulating factor 1-like isoform X2
RefseqXP_025644510.10.0growth-regulating factor 1 isoform X2
TrEMBLA0A445A1J90.0A0A445A1J9_ARAHY; Uncharacterized protein
STRINGXP_007138669.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-48growth-regulating factor 5