PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M0I6P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 276aa    MW: 30169 Da    PI: 4.7102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M0I6PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039253274323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ C+k F++   L++H +  H
  Araip.M0I6P 253 CKSCNKNFNSETGLQQHSKAkH 274
                  *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-5245273No hitNo description
PROSITE profilePS5015711.011251276IPR007087Zinc finger, C2H2
PROSITE patternPS000280253274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEFWGAEVKV GEIVKVDNKE SDVCIHLSQV ALGESKKDKP SEPVVVYLKV GEQKFVVGTL  60
NKEKFPQIAL DLVVEKEFEL SHTSKNASVH FYDSSDEDHP LPVAQNGKTE VKVEEVKVSQ  120
SKKSDAQAGA SKQVKVVEPK KTEDSDDESD EDDEMDSSDE EMEDGESDEE GESDDDDDEE  180
DTPPKKVDQG KKRPNESATK TPISNKKAKN ATPEKTDAKK GGHTATPHPA KKGGKTPNSD  240
GKDTPKSGGQ FLCKSCNKNF NSETGLQQHS KAKHGQ
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M0I6P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171016.11e-156histone deacetylase HDT1
RefseqXP_025671793.11e-156histone deacetylase HDT1
SwissprotQ8LJS22e-89HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A444Y7G01e-155A0A444Y7G0_ARAHY; Uncharacterized protein
STRINGXP_007150109.11e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-25histone deacetylase 2C