PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.M07CI

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MIKC_MADS

Protein Properties

Length: 170aa MW: 19582.2 Da PI: 10.5256

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.M07CI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99	1.9e-31	27	76	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+ Araip.M07CI 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 76 79***********************************************8 PP
2	K-box	69.6	9.6e-24	87	168	8	87
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 s +e+ +++ qqe++kL+++i+ +q+ +Rh+lGe L+sLslkeL++Le++Lek+l+++Rs+K+ l ++ ++l+ k e+ Araip.M07CI 87 SsnTESVSEANTQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKEIELQNHNNYLRAKIAEH 168 223566667899****************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.6E-42	19	78	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.824	19	79	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-30	20	90	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.77E-38	20	89	No hit	No description
PRINTS	PR00404	2.8E-33	21	41	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	21	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-27	28	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-33	41	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-33	56	77	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.4E-17	92	166	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	11.782	95	170	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MELPNQAPEE GSSQHQKKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALVVFSSRG RLYEYANNRY KKASAASSNT ESVSEANTQQ ESSKLRRQIR DIQNLNRHIL 120 GEALSSLSLK ELKNLESRLE KGLSRVRSRK EIELQNHNNY LRAKIAEHER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
5f28_A	3e-21	19	83	1	65	MEF2C
5f28_B	3e-21	19	83	1	65	MEF2C
5f28_C	3e-21	19	83	1	65	MEF2C
5f28_D	3e-21	19	83	1	65	MEF2C
6byy_C	3e-21	19	83	1	65	MEF2 CHIMERA
6byy_D	3e-21	19	83	1	65	MEF2 CHIMERA
6bz1_A	3e-21	19	83	1	65	MEF2 CHIMERA
6bz1_B	3e-21	19	83	1	65	MEF2 CHIMERA
6bz1_C	3e-21	19	83	1	65	MEF2 CHIMERA
6bz1_D	3e-21	19	83	1	65	MEF2 CHIMERA
6c9l_A	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	2e-21	19	78	1	60	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.M07CI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY770404	3e-57	AY770404.1 Lotus corniculatus var. japonicus MADS box protein AGL1 mRNA, partial cds.
GenBank	BT135371	3e-57	BT135371.1 Lotus japonicus clone JCVI-FLLj-6P2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016166121.1	1e-110	floral homeotic protein AGAMOUS isoform X2
Refseq	XP_020962678.1	1e-110	floral homeotic protein AGAMOUS isoform X3
Refseq	XP_025667575.1	1e-110	floral homeotic protein AGAMOUS isoform X1
Refseq	XP_025667576.1	1e-110	floral homeotic protein AGAMOUS isoform X2
Swissprot	Q93XH4	4e-83	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	A0A445C3N1	1e-106	A0A445C3N1_ARAHY; Uncharacterized protein
STRING	GLYMA14G03100.1	4e-96	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF684	29	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.2	2e-69	MIKC_MADS family protein

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]