PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LVJ4W
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 703aa    MW: 76982.3 Da    PI: 6.9897
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LVJ4WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +s  +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++e
  Araip.LVJ4W 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQS--ILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RADNGE 220
                  89*****************************986677775..9999********************************************..448999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Araip.LVJ4W 221 LCVGIRRA 228
                  9*****97 PP
2Auxin_resp111.67.7e-37292375183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a++k++FevvY+Prast+eF+vk++ ve+al+++++ G Rfkmafetedss++++ +Gt+++v+ +dp+ WpnS+Wr+L+
  Araip.LVJ4W 292 AATLAANKQPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSVQVADPLGWPNSPWRLLQ 375
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-36120230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-29121228IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-21126227No hitNo description
PROSITE profilePS5086313.183127229IPR003340B3 DNA binding domain
PfamPF023627.0E-22127228IPR003340B3 DNA binding domain
SMARTSM010198.7E-21127229IPR003340B3 DNA binding domain
PfamPF065079.6E-32292375IPR010525Auxin response factor
PROSITE profilePS5174516.815617700IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MITFMESKEK TREAVEKCLD PQLWHACAGG MVQMPQVNTK VYYFPQGHAE HACGPVNFRT  60
CPKVVPPMVP CRVGAVKYMA DPETDEVYAK LRLLPVSGND ADYGNDAGVV GGGGIHEPEA  120
QDKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQSILAK DVHGETWKFR  180
HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRADNGE LCVGIRRAKK GLGGGPEASS  240
GWNPAGGNCP MPYGGFPGFL KEDDMRLLRN GLDTGTRMMG KGKVRPEAVI EAATLAANKQ  300
PFEVVYYPRA STPEFCVKAS LVEAALQIRW CSGIRFKMAF ETEDSSRISW FMGTISSVQV  360
ADPLGWPNSP WRLLQVTWDE PDLLQNVRRV SPWLVELVSN MPALHLSPFS PPRKKLRLPQ  420
HPDFPLDGQI HVPTFSSNLL GPSNPYGCLP ETTPAGMQGA RHGHYGISLS DLHLSKLQSG  480
LYSAGFPSLD HAATPIRVPN NLLLQKPSTS ESVSCLLSMA SSVQSSKKPD EGKTPQLVLF  540
GQKILTEQQL SLSSSGDAVS PVLTGNSSSD GNADKLNNFS DGSGSALHHQ GLPERSSCER  600
FPWYRDHRQE TEAGLETGHC KVFMESEDVG RTLDLSLLAS YDELHRKLAD MFGIEKSEML  660
SHVLYRDING AVKHLGDEPF SDFSRTTKRL TILMDSSSDN VGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-79239637388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LVJ4W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184872.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A371F0V80.0A0A371F0V8_MUCPR; Auxin response factor (Fragment)
STRINGXP_007144353.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]