PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LUF2N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 426aa    MW: 46791.8 Da    PI: 9.6181
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LUF2NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP155.53.2e-481172801134
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec.eaes 77 
                  aa+kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikel+++                    s+ s+s+c e++ 
  Araip.LUF2N 117 AAAKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSknhsasdeaeagagagannkSFASSSDCdEDDF 214
                  689**************************************************************888777777777777777766666677764444 PP

          TCP  78 ssssasnsssg.........kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                  ++ s +n++ +         +++++ ++ +++++sa ++++++kesr+karararert++km+++ 
  Araip.LUF2N 215 EVLSRNNHHRHhqqglvwsdARERKLKSAQQKEASACNVRAKMKESREKARARARERTSNKMCNSI 280
                  444444333336788***84334444477777788888899999*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-43119278IPR005333Transcription factor, TCP
PROSITE profilePS5136936.525120178IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607258275IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MFPSTTYSYS TGPYPCFPSS SSSYPLFPFL NPENNASSSS ATTATNNNNN NLLHDPSLCV  60
PYIPIPEALT NLATVVDNTS NLAASSSMPK QHDLNGGGGG GAHHHFGISS LLAKKPAAAK  120
KDRHSKIYTA QGLRDRRVRL SIEIARKFFD LQDMLGFDKA SNTLDWLFTK SKKAIKELAR  180
SKNHSASDEA EAGAGAGANN KSFASSSDCD EDDFEVLSRN NHHRHHQQGL VWSDARERKL  240
KSAQQKEASA CNVRAKMKES REKARARARE RTSNKMCNSI MGNSSSSSGK VLELKKRCPA  300
PSENPHHLGG GEVSQTRDDF NVIEESIVIK RKLKQPSMMS SSHHHHHHHH QLNLPIPNNN  360
NKEASFNNNS DNNYHPGNYT NLSPNWDNAN GPASSANNRS NFCAIASMNL STGMHVFLVR  420
NRNCGC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LUF2N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946347.10.0transcription factor DICHOTOMA-like
TrEMBLA0A444X9D80.0A0A444X9D8_ARAHY; Uncharacterized protein
STRINGXP_007151756.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.29e-28TCP family protein