PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.LU396

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 558aa MW: 63410.1 Da PI: 9.1476

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.LU396	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58	3.1e-18	118	204	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a + ++ k g w ++k++l+H+H+++p Araip.LU396 118 KFYRNYAKAAGFSTRVQSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCPAIIYIHTLKdVGAWIISKVVLDHSHPCCP 204 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-15	118	204	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.877	345	381	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-4	356	383	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MSSLLLIPLP SLLSLSPPFS YRIHYLVVVA MSPSIAVAVA NEICSFFFSR VFPPSSRSFF 60 SPPFSLITDD STSDCQLNQG EVDYEFESNE VPEPLSVVDD QFVPKVGMTF TTLEDAGKFY 120 RNYAKAAGFS TRVQSTNRKG NEIKNQLITC SREGKWKSKI SPTEKTNPTA SLNCPAIIYI 180 HTLKDVGAWI ISKVVLDHSH PCCPSKAEML KQHRELSMSI RRTIKNNEEA DLYEDRHIWV 240 PIYLDHHFWA GMRSTQWSEN MHSFFNKEQA ERESDAADFH TVIPCATKSS IKAQFQDVYT 300 HQKFREVQAQ FRGKANCITR LTNSALGYSV YEVGEQVSSS IFNKFVVTYD SVAAEVKCQC 360 LLFESRGILC HHALSVLSFE RVSQVSPRYI LERWSKKVKR RHTHIKSSHD EPLSEPRSKR 420 FDQLVFHSQN ICKFASESEE LTAILHRAYD NVMVEMESLK AKRKGTSSLS HEDANLESVN 480 KLQSPPRIRT RGRPKNRLGS KLEKQIANAT KKKKTKALNE LNLFDAASVV HSNSSQYQAR 540 VMNYQFRVPA PVDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MSSLLLIPLP SLLSLSPPFS YRIHYLVVVA MSPSIAVAVA NEICSFFFSR VFPPSSRSFF  60
SPPFSLITDD STSDCQLNQG EVDYEFESNE VPEPLSVVDD QFVPKVGMTF TTLEDAGKFY  120
RNYAKAAGFS TRVQSTNRKG NEIKNQLITC SREGKWKSKI SPTEKTNPTA SLNCPAIIYI  180
HTLKDVGAWI ISKVVLDHSH PCCPSKAEML KQHRELSMSI RRTIKNNEEA DLYEDRHIWV  240
PIYLDHHFWA GMRSTQWSEN MHSFFNKEQA ERESDAADFH TVIPCATKSS IKAQFQDVYT  300
HQKFREVQAQ FRGKANCITR LTNSALGYSV YEVGEQVSSS IFNKFVVTYD SVAAEVKCQC  360
LLFESRGILC HHALSVLSFE RVSQVSPRYI LERWSKKVKR RHTHIKSSHD EPLSEPRSKR  420
FDQLVFHSQN ICKFASESEE LTAILHRAYD NVMVEMESLK AKRKGTSSLS HEDANLESVN  480
KLQSPPRIRT RGRPKNRLGS KLEKQIANAT KKKKTKALNE LNLFDAASVV HSNSSQYQAR  540
VMNYQFRVPA PVDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.LU396

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-21	far-red elongated hypocotyls 3