PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.L89G5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25233.8 Da PI: 5.6153 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.8e-05 | 208 | 224 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C+k+F+r nL+ Araip.L89G5 208 FSCPVCSKTFNRYNNLQ 224 89************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 208 | 223 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MPLHPHYFPS SSSSSSSSFI SNQNSINSSL FSSPSYPLYF SNTRLFSVQL EPPSSSSSSS 60 VAALPPPPSS PPLIEALPFI NTISLKNHSN NNSSDQEVVV DKKRKDNNKK DQENLLADDD 120 YDDNEGVAVA LRIGLPNSVS DNTSGIDDRQ KKKKISSNSE EIVGEKDEVM SVVSEHHPSL 180 LERFNNNKTQ FQYWIPTASQ ILIGPTQFSC PVCSKTFNRY NNLQVTVY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 153 | DRQKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.L89G5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025669265.1 | 1e-159 | zinc finger protein WIP2 | ||||
TrEMBL | A0A444Y1J1 | 1e-157 | A0A444Y1J1_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 9e-17 | C2H2 family protein |