PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L4V14
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-other
Protein Properties Length: 347aa    MW: 38471.5 Da    PI: 8.5947
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L4V14genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.73.4e-071374655
                 S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 +ft++++ e+e+  ++  n  p ++  + +A+k            ++ rqV +WFqN+R+  
  Araip.L4V14 13 RFTSSEVAEMEAILHEhnNAMPARDVLTAIAEKFsespgrkdkiTVQMRQVWNWFQNKRYAI 74
                 69999999***9999656999*********************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-10477IPR009057Homeodomain-like
SMARTSM003897.0E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-71277IPR009057Homeodomain-like
PROSITE profilePS500719.5881377IPR001356Homeobox domain
CDDcd000866.54E-41375No hitNo description
PfamPF000461.2E-41374IPR001356Homeobox domain
PfamPF167194.9E-40123249IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTSSEVA EMEAILHEHN NAMPARDVLT AIAEKFSESP GRKDKITVQM  60
RQVWNWFQNK RYAIRAKLNK SLVKLDITPM TKASSAVVKN IHQPTAATIP TASGKVTQES  120
SATEFEAKSG RDRAWYDVAN FIMHRYLESG DPEVLVRFSG FGPAEDEWVN VRKNVRPRSL  180
PCESAECVAV LPGDLILCFQ EGKEQALYFD AHVLDAQRRR HDVRGCRCRF LVRYDHDQSE  240
EIVQLRKICR RPETDFRLQQ LHAVPEMKSG MDPAPVHAVR VTTSAESQKQ QNANTPMSTL  300
AQSISKVETS SDVTAGSVFP VSAATFATNV ASSSVHGASS HSMAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461202531134SHH1 SAWADEE
4iur_B2e-461202531134SHH1 SAWADEE
4iut_A2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461202531134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L4V14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171569.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_025672928.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-128SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A444Y3V10.0A0A444Y3V1_ARAHY; Uncharacterized protein
STRINGAET030101e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-116sequence-specific DNA binding transcription factors;sequence-specific DNA binding