PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.L2WGT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 1068aa MW: 120054 Da PI: 6.2798

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.L2WGT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.3	1.1e-56	23	137	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+yw+ Araip.L2WGT 23 AQHRWLRPAEICEILCNYRIFHITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWM 120 49********************************************************************************************** PP CG-1 102 Leeelekivlvhylevk 118 Le ++ +iv+vhyl+vk Araip.L2WGT 121 LEPDMMHIVFVHYLDVK 137 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	83.191	16	142	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-81	19	137	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.2E-50	22	136	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	6.86E-10	498	591	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	18.006	688	797	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	8.1E-18	690	798	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.49E-17	694	797	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.04E-13	694	797	No hit	No description
Pfam	PF12796	2.0E-6	710	793	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.965	738	770	IPR002110	Ankyrin repeat
SMART	SM00015	0.092	914	936	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	5.84E-7	914	961	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.004	916	944	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0026	917	935	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0054	937	959	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.029	938	963	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.4E-4	940	959	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence Send to blast
MAERSSSFGL GPRLDLQQLQ FEAQHRWLRP AEICEILCNY RIFHITSEPP NRPPSGSLFL 60 FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRSYWM 120 LEPDMMHIVF VHYLDVKVNK TNIGRNIDTD EAMSESQKGS SVLSGFPTSY NSMPSRSTDS 180 MSPTSTLTSL CEDADSEDIR QASSGMHSFG NPLGSGQAMD IIDTCSNRSY FMHPISGDHG 240 QSTISVTDYI PHVQGDKSRL GITAYIEDRK SHVMPLRDTI TEQSVGLYTP CSSISSGSRG 300 STLEQEKAVP ENLFGSKSGL NEESRGSQST QSNWQITFDE NTGPLPRWSL TESLSLEFES 360 DYSMALFGGE TDNAIPEICP DLFTSNGELK EQPVQQKFPK QSTDAQSQHA PRSDSEYELP 420 REDSAGYSLN AKHALLDGEE NLKKVDSFSR WITKELGEVD DLHLQSSPGI SWSTDECGHV 480 IDDTSLNPSL SQDQLFSISD FSPKWAYADS EIEVLIIGAF LKSQLEVEAC HWSCMFGEIE 540 VPXXXXXXXX XXXXNGIMCC QAPPRQVGRV PFYVTCSNRF ACSEVRDFEF REGFARNVDF 600 ADFFYSSTEM MLHLRLDELL SSKSVLSTNQ DFEGYMETRN LIFKLISLKE EEEYSHKEEA 660 TAGLSVSQHK LEEHVFHRKI KEKLYSWLLH KVTEGGKGPN VLDKDGQGVL HLVAALGYDW 720 AITPVITAGV NINFRDVNGW TALHWAASCG RERTVAVLVS MGAAAGALTD PSPAFPSGRT 780 AADLASSNGH KGISGFLGES LLTSHLASLT MDDPSEDGRN KTLGGKAVQT ASERSATPLL 840 YGDVSDTLCL KDSLSAVRNA TQAADRIHQV FRMQSFQRKQ LAQCEDDDEF GLSDQQVLSF 900 IASRACKSGQ GEGLVNAAAT QIQKKFRGWK KRKEFLIIRQ RVVKIQAHVR GHQVRKQYKL 960 IWSVGILEKV ILRWRRKGRG LRGFRPDTLN MVPNPPSNPS QEDDYDVLKE GRKQSEERFQ 1020 KALSRVKSMV QYPEARAQYR RVLNVVEDFR QTKVLYFLIY GLLPIAYD

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence Send to blast

MAERSSSFGL GPRLDLQQLQ FEAQHRWLRP AEICEILCNY RIFHITSEPP NRPPSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRSYWM  120
LEPDMMHIVF VHYLDVKVNK TNIGRNIDTD EAMSESQKGS SVLSGFPTSY NSMPSRSTDS  180
MSPTSTLTSL CEDADSEDIR QASSGMHSFG NPLGSGQAMD IIDTCSNRSY FMHPISGDHG  240
QSTISVTDYI PHVQGDKSRL GITAYIEDRK SHVMPLRDTI TEQSVGLYTP CSSISSGSRG  300
STLEQEKAVP ENLFGSKSGL NEESRGSQST QSNWQITFDE NTGPLPRWSL TESLSLEFES  360
DYSMALFGGE TDNAIPEICP DLFTSNGELK EQPVQQKFPK QSTDAQSQHA PRSDSEYELP  420
REDSAGYSLN AKHALLDGEE NLKKVDSFSR WITKELGEVD DLHLQSSPGI SWSTDECGHV  480
IDDTSLNPSL SQDQLFSISD FSPKWAYADS EIEVLIIGAF LKSQLEVEAC HWSCMFGEIE  540
VPXXXXXXXX XXXXNGIMCC QAPPRQVGRV PFYVTCSNRF ACSEVRDFEF REGFARNVDF  600
ADFFYSSTEM MLHLRLDELL SSKSVLSTNQ DFEGYMETRN LIFKLISLKE EEEYSHKEEA  660
TAGLSVSQHK LEEHVFHRKI KEKLYSWLLH KVTEGGKGPN VLDKDGQGVL HLVAALGYDW  720
AITPVITAGV NINFRDVNGW TALHWAASCG RERTVAVLVS MGAAAGALTD PSPAFPSGRT  780
AADLASSNGH KGISGFLGES LLTSHLASLT MDDPSEDGRN KTLGGKAVQT ASERSATPLL  840
YGDVSDTLCL KDSLSAVRNA TQAADRIHQV FRMQSFQRKQ LAQCEDDDEF GLSDQQVLSF  900
IASRACKSGQ GEGLVNAAAT QIQKKFRGWK KRKEFLIIRQ RVVKIQAHVR GHQVRKQYKL  960
IWSVGILEKV ILRWRRKGRG LRGFRPDTLN MVPNPPSNPS QEDDYDVLKE GRKQSEERFQ  1020
KALSRVKSMV QYPEARAQYR RVLNVVEDFR QTKVLYFLIY GLLPIAYD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.L2WGT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025639517.1	0.0	calmodulin-binding transcription activator 2 isoform X1
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A445DMP5	0.0	A0A445DMP5_ARAHY; Uncharacterized protein
STRING	GLYMA05G24430.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]