PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L05NW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 328aa    MW: 37510.5 Da    PI: 7.2352
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L05NWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-1261117155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  Araip.L05NW  61 SRFRGVSRHRWTGRYEAHLWDkLSWNItQRkKGKQ-GAYDEEESAARAYDLAALKYWG 117
                  789******************88887786635555.********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-1761127No hitNo description
SuperFamilySSF541712.94E-1461127IPR016177DNA-binding domain
PfamPF008475.4E-961117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-1262126IPR001471AP2/ERF domain
PROSITE profilePS5103217.97862125IPR001471AP2/ERF domain
SMARTSM003809.5E-1862131IPR001471AP2/ERF domain
PRINTSPR003674.4E-56374IPR001471AP2/ERF domain
PROSITE profilePS510329.44114190IPR001471AP2/ERF domain
SMARTSM003806.4E-4149196IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-6162192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-6165191IPR001471AP2/ERF domain
PRINTSPR003674.4E-5172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSMPQSEFQV AARGNKRRRR ELTAVALTNE ENQSKEQTLQ PHQQQQKVDQ NSTTNTTKRS  60
SRFRGVSRHR WTGRYEAHLW DKLSWNITQR KKGKQGAYDE EESAARAYDL AALKYWGTST  120
FTNFPISDYE KEIEIMQTMT KEEYLATLRR KSSGFSRGVS KYRGTQEEAA RAYDIAAIEY  180
RGIHAVTNFD LSSYIRWLKP SGGNISELKQ ESEVTPESQT VVSQTHSPIE GSKSLAVHTF  240
SPDYLDLPQN HEIFENKTFQ FSSNKSSSPT ALSLLLRSSI FRELVEKNLN MCGDETDGED  300
KKDQRPQITS DDELGGIFYD GISNLPYL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L05NW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379942e-32AC137994.19 Medicago truncatula clone mth2-23f15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945988.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotQ8LSN21e-56BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A444X8070.0A0A444X807_ARAHY; Uncharacterized protein
STRINGGLYMA09G37540.21e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-56AP2 family protein