PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KV1LB
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 551aa    MW: 61993.4 Da    PI: 5.8467
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KV1LBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.81.1e-1281805501373
         GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l+++L++cA+avs++d + a   + + l +++s +g+p+qRl ay++e+L+arl +s+s +yk+l++++ +   s+e +++++++++++P+ kf++++
  Araip.KV1LB 180 LRDVLVRCAQAVSDDDIATAIGWMDNvLGKMVSVYGEPLQRLGAYLLEGLRARLESSGSMIYKSLKCEQPT---SKELMSYMHILYQICPFWKFAYVA 274
                  5789**************9988886527899***************************************9...99999******************* PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  aN  Ilea+++e+++HiiDf+i+qG+QW+ L+qaLa Rp+gpps+RiT+v++++s   +   le +g+rL++fA+++gvp+ef++ +a   +++e  +
  Araip.KV1LB 275 ANAVILEAMATESMIHIIDFQITQGTQWLLLIQALAHRPGGPPSIRITAVDDSQSIhaRGGGLEIVGQRLSDFARSCGVPLEFHI-AAMCGSQVERTN 371
                  ****************************************************9988889999**********************9.899********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  + ++ gEalaVn+ + lh++ desvs+e++rd++L+lvkslsPkvv++veqe+++n++sF++rf+e ++yy+a+f+s++a+ pr++++r + E+++++
  Araip.KV1LB 372 IVIRAGEALAVNFPYVLHHMQDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSSFFNRFVEIMDYYTAMFESIDAGCPRDDRKRLNAEQHCVA 469
                  ************************************************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  r+ivn+vaceg er+erhe l+kWr+r+++aGF++ pls ++++ ++ +l++++++ yrve+++g+l+lgW++r++v+ SaW
  Araip.KV1LB 470 RDIVNMVACEGVERVERHELLGKWRMRFSMAGFRQWPLSPSVVAAVRNMLKEFNGN-YRVEQRDGALYLGWMRRAMVTSSAW 550
                  ******************************************************77.************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.877154532IPR005202Transcription factor GRAS
PfamPF035143.9E-126180550IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MCPFLLRLSP IQFQPGRGSK PSWYPSMYQM LQSNLCHSIH HDNMMKGATV SFESCKDQYF  60
TLESSPATTE LIGCETDSPS YASGLSSNRS PFSPQVSQSC YSDNHHSSDN TYGSPYSSVD  120
DGNEWKHKLR ELEISLLEPN ESDAADSYDN NCVQGGLTTA SPTIEYDWDQ IVQMIPKLEL  180
RDVLVRCAQA VSDDDIATAI GWMDNVLGKM VSVYGEPLQR LGAYLLEGLR ARLESSGSMI  240
YKSLKCEQPT SKELMSYMHI LYQICPFWKF AYVAANAVIL EAMATESMIH IIDFQITQGT  300
QWLLLIQALA HRPGGPPSIR ITAVDDSQSI HARGGGLEIV GQRLSDFARS CGVPLEFHIA  360
AMCGSQVERT NIVIRAGEAL AVNFPYVLHH MQDESVSTEN HRDRLLRLVK SLSPKVVTLV  420
EQESNTNTSS FFNRFVEIMD YYTAMFESID AGCPRDDRKR LNAEQHCVAR DIVNMVACEG  480
VERVERHELL GKWRMRFSMA GFRQWPLSPS VVAAVRNMLK EFNGNYRVEQ RDGALYLGWM  540
RRAMVTSSAW C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-5518655124378Protein SCARECROW
5b3h_D6e-5518655124378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KV1LB
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016195689.10.0scarecrow-like protein 13
RefseqXP_016195696.10.0scarecrow-like protein 13
RefseqXP_016195701.10.0scarecrow-like protein 13
RefseqXP_025629786.10.0scarecrow-like protein 13
RefseqXP_025629787.10.0scarecrow-like protein 13
RefseqXP_025629788.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A445EL970.0A0A445EL97_ARAHY; Uncharacterized protein
STRINGGLYMA17G01150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13