PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.KR88K | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Nin-like | ||||||||
Protein Properties | Length: 102aa MW: 11464.9 Da PI: 4.8896 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 37 | 6.7e-12 | 68 | 102 | 3 | 37 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCR 37 ++i l dl +yF+ pi +A ++L+++lTvLK++CR Araip.KR88K 68 AKIALPDLVEYFDVPIVEALRNLNIGLTVLKKKCR 102 7899******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02042 | 3.0E-7 | 70 | 102 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MLDSSKEESQ ENSDGHQSSQ EVLPVFNQDL NCRPLDENTT ELIDNKTNVE SLPGFGAKKR 60 RAQSDHIAKI ALPDLVEYFD VPIVEALRNL NIGLTVLKKK CR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.KR88K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020972690.1 | 6e-70 | protein RKD5-like | ||||
TrEMBL | A0A444WUW3 | 3e-57 | A0A444WUW3_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444WV06 | 9e-54 | A0A444WV06_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G36360.1 | 1e-32 | (Glycine max) | ||||
STRING | XP_007157999.1 | 1e-32 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9646 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 8e-16 | RWP-RK domain-containing protein |