PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.KR4TE | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18783.7 Da PI: 9.1234 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.6 | 8e-42 | 39 | 138 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ael++++ Araip.KR4TE 39 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVR 136 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Araip.KR4TE 137 SE 138 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.747 | 38 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-42 | 39 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MPECPEKGKK IKREGDNVSS QMGRRHMLGP AGTLNTITPC AACKLLRRRC AQECPFSPYF 60 SPHEPQKFAS VHKVFGASNV SKMLMEVPEC QRADAANSLV YEANVRLRDP VYGCMGAIST 120 LQHQVQSLQA ELNAVRSEIL KYKLREANNN IIIPSSHHHL PMLPSSGAVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-45 | 39 | 146 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-45 | 39 | 146 | 11 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.KR4TE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016179225.1 | 1e-119 | LOB domain-containing protein 15 | ||||
Refseq | XP_025684516.1 | 1e-119 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 1e-79 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A444X553 | 1e-117 | A0A444X553_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G39830.2 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-80 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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