PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.KCA5D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 889aa MW: 97914.9 Da PI: 7.3135 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.4 | 1.3e-18 | 331 | 430 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+l+ sd+++ grlvlpkk+ae++ ++++e+ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++lv+ Araip.KCA5D 331 FQKTLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGKLVM 426 99**************************555566778***************9989999999***9.********************766.7777777 PP EEE- CS B3 95 kvfr 98 ++++ Araip.KCA5D 427 GFRK 430 7776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.89E-20 | 328 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-31 | 328 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.71E-22 | 329 | 430 | No hit | No description |
SMART | SM01019 | 7.8E-22 | 331 | 432 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-16 | 331 | 430 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.18 | 331 | 432 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.697 | 559 | 609 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.6E-12 | 564 | 606 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MASAAASVSS SSLPSSGFCY NPECKELKSQ IPKKGWRLRS GDRAELCDRC GFCETFHLNT 60 SGWRNCETCR KRIHCGCIVS DNSFMLLDPG GVECNVCAKE HHMSSTRPWS QSFCSNLSLR 120 LRDISTNNWN QLAGSGPVPW KQAPSLYNSV SSSNLQPGVA SLVELTHKLG KIYGNERLPD 180 FSLGKKNENF PGISNWNTKL ESQEIMLVNG AMNEDKPSSC LNLCQQSSSV KEDSSPQPFA 240 LPVPYASPNE RNGQPGGNQL QQTPPAPLGK QYSGTVHLSL DTSGETQVRN GRPRVDARGR 300 SQLLPRYWPR CTDQELQQIS IDSNSVITPL FQKTLSASDA GRIGRLVLPK KCAEAYFPPI 360 SQPEGLPLKI LDAKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRLEP 420 EGKLVMGFRK ASTATQSDQD NEANKTGNGH STIGEVEMAD PSSWSKVDKS GYIAKEALGS 480 KSSISRKRKS SILGSKSKRL KIENEDLIEL KITWQEAQGL LRPPPDHVPS IVVIEGFEFE 540 EYEDAPVLGK PTIFTTSNEG EKIQWAQCEN CLKWRKLPAS AILHSKWTCS DNSWDPERSS 600 CSVAQELTAE ELENLLPSCN SGFDVDSFFR SNVLNCFSVI SKKMKATKQE TDNFDAMEGL 660 DTLANLAILG EDESLPTSTQ VTTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCTVCSTV 720 KRRFLTLQQK REKKQTEKAE TIRKRQQPPP PGQSAEIVIE DDSLPCSNAG DSSPNPNKDG 780 NGGSDDDPNR IKSSNLPFKG QIDLNIQPER EEELSPRSDS GGMKALLDGT ERHLRQLNIL 840 NSGDADSSGS QSKGVGDETR EQKLSNGVVL GNNSHNSDRE LVQPLTMNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-63 | 309 | 434 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 484 | 489 | SRKRKS |
2 | 486 | 500 | KRKSSILGSKSKRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.KCA5D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025638134.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A445DRG5 | 0.0 | A0A445DRG5_ARAHY; Uncharacterized protein | ||||
STRING | XP_004485711.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-144 | HSI2-like 1 |